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AT5G36190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G36200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:833616EMBL:AB018112EMBL:BT029317EMBL:CP002688EnsemblPlants:AT5G36190EnsemblPlants:AT5G36190.1entrez:833616
GeneID:833616Gramene:AT5G36190.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF120InterPro:IPR017451KEGG:ath:AT5G36190OMA:HYNSAYA
PhylomeDB:Q9LVX8Proteomes:UP000006548RefSeq:NP_198468.1TAIR:AT5G36190TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.50906
UniProt:Q9LVX8
Coordinates (TAIR10) chr5:-:14243109..14243546
Molecular Weight (calculated) 17633.20 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.39
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSYQLIFFT AMVYCYCYTS PTMTSSLRLR TLILGKQRWI KPRNFYQFCD KYAIGYENKK NNSLRNHKIL RFNDGSVANY RIYEFEIYNF NSDSWKVFDF
101: TPDWDISFTD LSVSLKGYTY WLIRSNGLIQ EYYARSLRKM MIKNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)