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AT5G35970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1112eggNOG:KOG1803EMBL:CP002688EnsemblPlants:AT5G35970EnsemblPlants:AT5G35970.1entrez:833589Gene3D:3.40.50.300
GeneID:833589GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0016787Gramene:AT5G35970.1hmmpanther:PTHR10887
hmmpanther:PTHR10887:SF320InParanoid:F4K1G7InterPro:IPR014001InterPro:IPR027417KEGG:ath:AT5G35970ncoils:CoilOMA:KETWITR
PaxDb:F4K1G7Pfam:PF13086Pfam:PF13087PRIDE:F4K1G7ProteinModelPortal:F4K1G7Proteomes:UP000006548RefSeq:NP_198446.3
SMART:SM00487SMR:F4K1G7STRING:3702.AT5G35970.1SUPFAM:SSF52540TAIR:AT5G35970UniGene:At.45828UniProt:F4K1G7
Coordinates (TAIR10) chr5:-:14119060..14123078
Molecular Weight (calculated) 105054.00 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.16
Length 961 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAASSFLCR SIRIPSTTTA TAAFTFTRPP LNYVCVVGVR VFPTRKVFCS GVNGGSSVTK KKPRRKSNVS DKLRFKKIEK RNDNTESESL SVVEEPKNDK
101: ELSLRALNQN GDPLGRRDLG RNVVKWISQA MKAMASDFAT AEVQGEFSEL RQNVGSGLTF VIQAQPYLNA IPMPLGSEVI CLKACTHYPT LFDHFQRELR
201: DVLQDLERKN IMESWKESES WKLLKEIANS AQHREVARKA AQAKPVQGVL GMDSEKVKAI QERIDEFTSQ MSQLLQVERD TELEVTQEEL DVVPTPDESS
301: DSSKPIEFLV RHGDAPQELC DTICNLYAVS TSTGLGGMHL VLFKVGGNHR LPPTTLSPGD MVCIRVCDSR GAGATACTQG FVHNLGEDGC SIGVALESRH
401: GDPTFSKLFG KSVRIDRIHG LADALTYERN CEALMLLQKN GLQKKNPSIS VVATLFGDGE DITWLEQNDY VDWSEAELSD EPVSKLFDSS QRRAIALGVN
501: KKRPVMIVQG PPGTGKTGML KEVITLAVQQ GERVLVTAPT NAAVDNMVEK LLHLGLNIVR VGNPARISSA VASKSLGEIV NSKLASFRAE LERKKSDLRK
601: DLRQCLRDDV LAAGIRQLLK QLGKTLKKKE KETVKEILSN AQVVFATNIG AADPLIRRLE TFDLVVIDEA GQSIEPSCWI PILQGKRCIL SGDPCQLAPV
701: VLSRKALEGG LGVSLLERAA SLHDGVLATK LTTQYRMNDV IAGWASKEMY GGWLKSAPSV ASHLLIDSPF VKATWITQCP LVLLDTRMPY GSLSVGCEER
801: LDPAGTGSLY NEGEADIVVN HVISLIYAGV SPMAIAVQSP YVAQVQLLRE RLDDFPVADG VEVATIDSFQ GREADAVIIS MVRSNNLGAV GFLGDSRRMN
901: VAITRARKHV AVVCDSSTIC HNTFLARLLR HIRYFGRVKH ADPGSLGGSG LGLDPMLPYL G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)