AT5G35930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AMP-dependent synthetase and ligase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Pyrrolo-quinoline quinone beta-propeller repeat (InterPro:IPR018391), Pyrrolo-quinoline quinone repeat (InterPro:IPR002372), AMP-dependent synthetase/ligase (InterPro:IPR000873), Phosphopantetheine attachment site (InterPro:IPR006162), Acyl carrier protein-like (InterPro:IPR009081), AMP-binding, conserved site (InterPro:IPR020845), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT3G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14067197..14074404 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115600.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1040 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPKVVALYMP PSVEYVISVF SVLRCGEAFL PLDPSWPRER VLSLISSSNI SLVIACGLSS VESHWLVERN VCPVLLFSMD EKLSVETGCS SFVWPCKKER 0101: QRKFCYLMYT SGSTGKPKGV CGTEQGLLNR FLWMQELYPV VGEQRFAFKT SVGFIDHIQE FLGAILSSTA LVIPPFTLLK ENMISIIDFL EEYSISRLLA 0201: VPSMIRAILP TLQHRGHNNK LQSCLKLVVL SGEPFPVSLW DSLHSLLPET CFLNLYGSTE VSGDCTYFDC SELPRLLKTE EIGSVPIGKS ISNCKVVLLG 0301: DEDKPYEGEI CVSGLCLSQG YMHSSIESEG YVKLHNNSLC NHLTNDCGSQ LYYRTGDYGR QLSSGDLIFI GRRDRTVKLN GKRMALEEIE TTLELNPDIA 0401: EAVVLLSRDE TELASLKAFV VLNKESNSSD GIIFSIRNWM GGKLPPVMIP NHFVLVEKLP LTSSGKVDYE ALARLKCPTT GAQDMMQSNG TNSLLQNIKK 0501: AVCDALLVKE VSDDDDFFAI GGDSLAAAHL SHSLGIDMRL IYQFRSPSRL LIYLSEKEGK LREDMQHNTT QKLDHKIESQ NGNGLVSRTV PLHSGVTSGP 0601: TPSKLQCEKN NSPKRLKIDY EKFSPKRMKE NKLWDSGFSQ IQCAFSRCNK VHSPESCSNE EANREYWSLE IPRNQMVSMQ EIWKVHMESC VDASPLVVLK 0701: DSKTYLFIGS HSRKFSCIDA KSGSMYWETI LEGRIEGSAM VVGDFSQVVI GCYKGKLYFL DFSTGSLCWK FQACGEIKCQ PVVDTSSQLI WCGSHDHTLY 0801: ALDYRSQCCV YKLQCGGSIF ASPAIDEGHS SLYVASTSGR VIAVSIKDSP FHTLWLFELE APIFGSLCIT PSTQNVICCL VDGQVIAMSP SGTIIWRYRT 0901: GGPIFAGPCM SHVLPSQVLV CCRNGCVYSL EPESGCLVWE DNIGDPITAS AYIDENLHFE SHELLASDRL VTVCSSSGRV HVLRVRPSIL SRDSHDSKVG 1001: EITRMELQAD IFSSPVMIGG RIFVGCRDDY VHCLSLESCR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)