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AT5G35840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.704
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome C
Curator
Summary (TAIR10)
Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.
Computational
Description (TAIR10)
phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0642eggNOG:COG4251eggNOG:ENOG410IFBJEMBL:JF318755EMBL:JF318761EnsemblPlants:AT5G35840EnsemblPlants:AT5G35840.1
entrez:833570ExpressionAtlas:G4WU80Gene3D:3.30.565.10GeneID:833570GO:GO:0000155GO:GO:0005622GO:GO:0006351
GO:GO:0006355GO:GO:0009584GO:GO:0009585GO:GO:0009881GO:GO:0017006GO:GO:0018298Gramene:AT5G35840.1
hmmpanther:PTHR24423hmmpanther:PTHR24423:SF493InterPro:IPR000014InterPro:IPR001294InterPro:IPR001610InterPro:IPR003018InterPro:IPR003594
InterPro:IPR005467InterPro:IPR012129InterPro:IPR013515InterPro:IPR013516InterPro:IPR013654InterPro:IPR013767InterPro:IPR016132
InterPro:IPR029016KEGG:ath:AT5G35840OMA:GWNNKAAPfam:P14714Pfam:PF00360Pfam:PF00989Pfam:PF01590
Pfam:PF02518Pfam:PF08446Pfscan:PS50046Pfscan:PS50109Pfscan:PS50112PhylomeDB:G4WU80PIRSF:PIRSF000084
PRINTS:PR01033PROSITE:PS00245PROSITE:PS50046PROSITE:PS50109PROSITE:PS50112RefSeq:NP_198433.1scanprosite:PS00245
SMART:SM00065SMART:SM00086SMART:SM00091SMART:SM00387SMR:G4WU80STRING:3702.AT5G35840.1SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874tair10-symbols:PHYCTIGRfam:TIGR00229TIGRFAMs:TIGR00229UniGene:At.97UniProt:G4WU80
UniProt:P14714
Coordinates (TAIR10) chr5:+:14008049..14011619
Molecular Weight (calculated) 123729.00 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.09
Length 1111 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)