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AT5G35770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development.
Computational
Description (TAIR10)
STERILE APETALA (SAP); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, megasporogenesis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFX4eggNOG:ENOG410YBZWEMBL:AB011485EMBL:AJ223125
EMBL:CP002688EnsemblPlants:AT5G35770EnsemblPlants:AT5G35770.1entrez:833556
Gene3D:2.130.10.10GeneID:833556Genevisible:Q9FKH1GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009554GO:GO:0009908
GO:GO:0030154Gramene:AT5G35770.1HOGENOM:HOG000154254InParanoid:Q9FKH1
InterPro:IPR001810InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT5G35770
OMA:LWDFGAQPaxDb:Q9FKH1Pfam:Q9FKH1PhylomeDB:Q9FKH1
PIR:T51368PRIDE:Q9FKH1PRO:PR:Q9FKH1ProteinModelPortal:Q9FKH1
Proteomes:UP000006548RefSeq:NP_198426.1SMR:Q9FKH1STRING:3702.AT5G35770.1
SUPFAM:SSF50978SUPFAM:SSF81383TAIR:AT5G35770tair10-symbols:SAP
UniGene:At.416UniProt:Q9FKH1
Coordinates (TAIR10) chr5:-:13936457..13940786
Molecular Weight (calculated) 49309.20 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.14
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSSSSSDN GAGGSGGVFE APSPSRPRRG ANDVWPEPFL ESLAVQVAVN ASTSAGLLAA APALANVFRV CTTWHAVSRS DHLWQLLSRQ VWARTHLMHD
101: TWRDEFIYRH RTARNFRTRT HTYFTLQFDP SDVDEPDSLS CRCLTLSDLY LAAGFADGTV RLFLLNNRLH VRTLRPPLRD RFGRFSRAVS GIVISDSRLT
201: FATMDGDIHV AEIDGVGHTR TAYAGDIVND GALVDFTGCG RWWVGLFAGV PGRAFHIWDC NSEETTFVGG TLTDPEAVMG WHTLTELTTS LGRLRISGNE
301: TAVACTRWRI MVIDLRNQGV IIGEDEEQRR GLIVTGFDAN DEAYVRLDSR GNASVRRVNT QQTVCEFRVS GAAQRRVMGC VNRLHALMCA GGIMRVWEVE
401: RGEYLYSIRE RVGEVDAIVA DDRHVAVASA SSTAQSIIHL WDFGAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)