AT5G35570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G37980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:13750101..13753383 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72914.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||
| Length | 652 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGHHHDGGDG VPQHHVNSPR FSGPMTRRAQ SFKRGGSAGS SSNNNNTHVG VSGGDGNNNN NTSSTLRVHH EIDLPLNSPR SEIVSGSSGS DPSGGFDSAL 101: NRKHQTYGQL RERVVKGLLR KPMGSVVSDF SLRERKKLGH WMFFAFCGVC LFLGVFKICA TGWLGSAIDG AASDQDLSIP RVNLLDHSSH DYIYKDGGND 201: VDPTLVMVAS DVVGDQNSVV EFSGVWAKPE SGNFSRCIDS SRSRKKLGAN TNGYLLINAN GGLNQMRFGI CDMVAVAKIM KATLVLPSLD HSSYWADDSG 301: FKDLFDWQHF IEELKDDIHI VEMLPSELAG IEPFVKTPIS WSKVGYYKKE VLPLLKQHIV MYLTHTDSRL ANNDLPDSVQ KLRCRVNYRA LKYSAPIEEL 401: GNVLVSRMRQ DRGPYLALHL RYEKDMLAFT GCSHSLTAEE DEELRQMRYE VSHWKEKEIN GTERRLQGGC PLTPRETSLL LRALEFPSSS RIYLVAGEAY 501: GNGSMDPLNT DFPNIFSHSI LATKEELSPF NNHQNMLAGL DYIVALQSEV FLYTYDGNMA KAVQGHRRFE DFKKTINPDK MNFVKLVDAL DEGRISWKKF 601: SSKVKKLHKD RNGAPYNRES GEFPKLEESF YANPLPGCIC ENTEEEGLMR RT |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)