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AT5G35550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.
Computational
Description (TAIR10)
TRANSPARENT TESTA 2 (TT2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 5 (TAIR:AT3G13540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18773eggNOG:COG5147eggNOG:KOG0048EMBL:AB015477EMBL:AF371981EMBL:AJ299452EMBL:AY519630
EMBL:CP002688EMBL:DQ447000EMBL:DQ653318EnsemblPlants:AT5G35550EnsemblPlants:AT5G35550.1entrez:833520Gene3D:1.10.10.60
GeneID:833520Genevisible:Q9FJA2GO:GO:0003677GO:GO:0003700GO:GO:0005524GO:GO:0005634GO:GO:0006351
GO:GO:0006633GO:GO:0006970GO:GO:0009813GO:GO:0010023Gramene:AT5G35550.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF459
HOGENOM:HOG000237600InParanoid:Q9FJA2IntAct:Q9FJA2InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930iPTMnet:Q9FJA2
KEGG:ath:AT5G35550KO:K09422OMA:ELNRGAWPaxDb:Q9FJA2Pfam:PF00249Pfam:Q9FJA2Pfscan:PS51294
PhylomeDB:Q9FJA2PRIDE:Q9FJA2PRO:PR:Q9FJA2PROSITE:PS51294ProteinModelPortal:Q9FJA2Proteomes:UP000006548RefSeq:NP_198405.1
SMART:SM00717SMR:Q9FJA2STRING:3702.AT5G35550.1SUPFAM:SSF46689TAIR:AT5G35550tair10-symbols:ATMYB123tair10-symbols:ATTT2
tair10-symbols:MYB123tair10-symbols:TT2UniGene:At.6888UniProt:Q9FJA2
Coordinates (TAIR10) chr5:+:13726807..13727729
Molecular Weight (calculated) 29613.10 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.84
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)