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AT5G35390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis.
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: apical plasma membrane, apical part of cell; EXPRESSED IN: sepal, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G07040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G35390-MONOMEREC:2.7.11.1eggNOG:COG0515eggNOG:ENOG410IHM4EMBL:AB025636EMBL:AF058826EMBL:CP002688
EMBL:FJ708784EnsemblPlants:AT5G35390EnsemblPlants:AT5G35390.1entrez:833500Gene3D:3.80.10.10GeneID:833500Genevisible:C0LGU0
GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0016021Gramene:AT5G35390.1hmmpanther:PTHR27008hmmpanther:PTHR27008:SF31
HOGENOM:HOG000116554InParanoid:C0LGU0InterPro:IPR000719InterPro:IPR011009InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT5G35390
OMA:MACCEANPaxDb:C0LGU0Pfam:C0LGU0Pfam:PF00069Pfam:PF08263Pfscan:PS50011PhylomeDB:C0LGU0
PIR:T01183PRIDE:C0LGU0PRO:PR:C0LGU0PROSITE:PS50011ProteinModelPortal:C0LGU0Proteomes:UP000006548RefSeq:NP_198389.2
SMR:C0LGU0STRING:3702.AT5G35390.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT5G35390TMHMM:TMhelixUniGene:At.55132
UniProt:C0LGU0
Coordinates (TAIR10) chr5:+:13596918..13598976
Molecular Weight (calculated) 73487.60 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.30
Length 662 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPMQARTLS VYNVMVPLVC LLLFFSTPTH GLSDSEAILK FKESLVVGQE NALASWNAKS PPCTWSGVLC NGGSVWRLQM ENLELSGSID IEALSGLTSL
101: RTLSFMNNKF EGPFPDFKKL AALKSLYLSN NQFGGDIPGD AFEGMGWLKK VHLAQNKFTG QIPSSVAKLP KLLELRLDGN QFTGEIPEFE HQLHLLNLSN
201: NALTGPIPES LSMTDPKVFE GNKGLYGKPL ETECDSPYIE HPPQSEARPK SSSRGPLVIT AIVAALTILI ILGVIFLLNR SYKNKKPRLA VETGPSSLQK
301: KTGIREADQS RRDRKKADHR KGSGTTKRMG AAAGVENTKL SFLREDREKF DLQDLLKASA EILGSGCFGA SYKAVLSSGQ MMVVKRFKQM NNAGRDEFQE
401: HMKRLGRLMH HNLLSIVAYY YRKEEKLLVC DFAERGSLAI NLHSNQSLGK PSLDWPTRLK IVKGVAKGLF YLHQDLPSLM APHGHLKSSN VLLTKTFEPL
501: LTDYGLIPLI NQEKAQMHMA AYRSPEYLQH RRITKKTDVW GLGILILEIL TGKFPANFSQ SSEEDLASWV NSGFHGVWAP SLFDKGMGKT SHCEGQILKL
601: LTIGLNCCEP DVEKRLDIGQ AVEKIEELKE REGDDDDFYS TYVSETDGRS SKGESCESIS FA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)