suba logo
AT5G35330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : methyl-CPG-binding domain protein 02
Curator
Summary (TAIR10)
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational
Description (TAIR10)
methyl-CPG-binding domain protein 02 (MBD02); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 12 (TAIR:AT5G35338.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18742DNASU:833487eggNOG:ENOG4111HPQeggNOG:KOG4161EMBL:AB025636EMBL:AF058826EMBL:AK228378
EMBL:AY088026EMBL:BT005718EMBL:BT025800EMBL:CP002688EnsemblPlants:AT5G35330EnsemblPlants:AT5G35330.1EnsemblPlants:AT5G35330.2
EnsemblPlants:AT5G35330.3entrez:833487Gene3D:3.30.890.10GeneID:833487Genevisible:Q8LA53GO:GO:0000122GO:GO:0005634
GO:GO:0006346GO:GO:0006351GO:GO:0008270GO:GO:0008327GO:GO:0019899Gramene:AT5G35330.1Gramene:AT5G35330.2
Gramene:AT5G35330.3hmmpanther:PTHR12396HOGENOM:HOG000243216InParanoid:Q8LA53IntAct:Q8LA53InterPro:IPR001739InterPro:IPR011124
InterPro:IPR016177iPTMnet:Q8LA53KEGG:ath:AT5G35330OMA:TAREWKPPaxDb:Q8LA53Pfam:PF01429Pfam:PF07496
Pfam:Q8LA53Pfscan:PS50982Pfscan:PS51050PhylomeDB:Q8LA53PIR:T01176PRIDE:Q8LA53PRO:PR:Q8LA53
PROSITE:PS50982PROSITE:PS51050ProteinModelPortal:Q8LA53Proteomes:UP000006548RefSeq:NP_001190421.1RefSeq:NP_198383.1RefSeq:NP_974850.1
SMART:SM00391SMR:Q8LA53STRING:3702.AT5G35330.1SUPFAM:SSF54171TAIR:AT5G35330tair10-symbols:ATMBD2tair10-symbols:MBD02
tair10-symbols:MBD2UniGene:At.24132UniProt:Q8LA53
Coordinates (TAIR10) chr5:-:13523725..13525270
Molecular Weight (calculated) 30769.00 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.74
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSQSRAVQ RSSSPNEDRG ENQLVVYDLK GNDDTEEEVL PVQSQPLSSR TQCPSIGAFT VQCASCFKWR LMPSMQKYEE IREQLLENPF FCDTAREWKP
101: DISCDVPADI YQDGTRLWAI DKPNISRPPA GWQRLLRIRG EGGTRFADVY YVAPSGKKLR STVEVQKYLN DNSEYIGEGV KLSQFSFQIP KPLQDDYVRK
201: RPARLLDSID NTNTPVAKEA NPLAWISPDD HISLQLGTPT ESGLNNSHYQ PSKKKKTSTL SIFGSNDELA DR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)