suba logo
AT5G35190.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G35190EnsemblPlants:AT5G35190.1entrez:833473GeneID:833473GO:GO:0005199GO:GO:0009664
Gramene:AT5G35190.1InterPro:IPR006706iPTMnet:F4JYC5KEGG:ath:AT5G35190OMA:VSYKSPPPaxDb:F4JYC5Pfam:PF04554
ProteinModelPortal:F4JYC5Proteomes:UP000006548RefSeq:NP_198369.1STRING:3702.AT5G35190.1TAIR:AT5G35190TMHMM:TMhelixUniGene:At.1669
UniProt:F4JYC5
Coordinates (TAIR10) chr5:+:13434181..13435167
Molecular Weight (calculated) 37124.30 Da
IEP (calculated) 9.53
GRAVY (calculated) -1.02
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MERVHCMVYV VVLSAIAATV TAYPYSSHQT PQYNSPVHKH ESSYSPKKYS PYYSASPLPP LQYRRQGPKY TPHPKPYLFN SPPPPYYSPS PKEDYKSPPP
101: PYVYNSPPPP YYSPSPKVDY KSPPPPYVYN SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP YYSLSPKVDY KSPPPPYVYN SPPPPYYSPS PKVDYKFSPP
201: PYVYNSPSPP YYSPSPKVDY KSPPPPYVYN SPPPPYFSPS PKVDYKSPPP PYVYSSPPPP PYYSPSPEVS YKSPPPPPYY SPSLEVSYKS PPPLFVYNFP
301: PPPPFYSPSP KVSYKSPPAP YVSKTPNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)