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AT5G34870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc ion binding;nucleic acid binding (TAIR:AT4G06479.1); Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 7; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G34870EnsemblPlants:AT5G34870.1entrez:833422Gene3D:4.10.60.10GeneID:833422GO:GO:0003676
GO:GO:0008270Gramene:AT5G34870.1hmmpanther:PTHR23002hmmpanther:PTHR23002:SF54InterPro:IPR001878KEGG:ath:AT5G34870ncoils:Coil
PaxDb:F4JWU5Pfscan:PS50158PhylomeDB:F4JWU5PRIDE:F4JWU5PROSITE:PS50158ProteinModelPortal:F4JWU5Proteomes:UP000006548
RefSeq:NP_198336.1TAIR:AT5G34870UniGene:At.55122UniProt:F4JWU5
Coordinates (TAIR10) chr5:+:13185521..13187946
Molecular Weight (calculated) 57201.00 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.64
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSKGSNTV SLLHSVNVPN LENSAPSSST DDESLFVAMN DQFMAEDSDS TESDTSIESD PSDVWKLFAV PTENATEEQV NDSLNNMLTQ FYVPSTDEEG
101: SFGVPNLGTI GEHGLKLEEL NADLFDVPVI HANGAFGAMN EYGANDEYEM LMLMGNNKED ENEAIENELE HAIDQLIAEC AQDFGLIGEK GGGNGNDGGD
201: SSSDSFESLT LEPKSPSVIN ISSDSSQPIV MMLNPSKPES CWEIEMFKGD EPSEEEGRGR WDPMLLEQEL NHEYLMNRLK LDEERSKEKM AQRIVGVNLH
301: PLRIGYGINS KVKPRIRATA RKSVRRKLPT PAKRPWEICG YIDHPTEQCL HPPQAMPYMV DCAKCYSCGG VGHVSMYCPY LAPNAGEGSS RDALVFMGKG
401: ETSHERRHEG DSKTFVKMSE EFVGDRMRKS CLNAWPIDRM CPESTKPAKG KDGQEWARMG KDGKSWACRG RNFPCRVQNR HVWTPHLRCL AAQVTNLGAK
501: VGLVLEPKLA ESWSRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)