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AT5G32440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin system component Cue protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin system component Cue protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKCVeggNOG:ENOG4111M8YEMBL:AY142632EMBL:CP002688EnsemblPlants:AT5G32440EnsemblPlants:AT5G32440.1entrez:833203
ExpressionAtlas:Q8H1Q3GeneID:833203Gramene:AT5G32440.1hmmpanther:PTHR31245hmmpanther:PTHR31245:SF1HOGENOM:HOG000238845IntAct:Q8H1Q3
InterPro:IPR003892InterPro:IPR009060ncoils:CoilPfscan:PS51140PhylomeDB:Q8H1Q3PROSITE:PS51140Proteomes:UP000006548
RefSeq:NP_568521.1SMR:Q8H1Q3STRING:3702.AT5G32440.3SUPFAM:SSF46934TAIR:AT5G32440UniGene:At.19058UniProt:Q8H1Q3
Coordinates (TAIR10) chr5:+:12077014..12078396
Molecular Weight (calculated) 29634.10 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.60
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)