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AT5G30510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein S1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal protein S1 (RPS1); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT1G71720.1); Has 27453 Blast hits to 18967 proteins in 2720 species: Archae - 77; Bacteria - 20681; Metazoa - 178; Fungi - 177; Plants - 343; Viruses - 0; Other Eukaryotes - 5997 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0539eggNOG:ENOG410IJEZEMBL:AC069554EMBL:AF370232EMBL:AY059914EMBL:AY088230EMBL:AY142540
EMBL:CP002688EnsemblPlants:AT5G30510EnsemblPlants:AT5G30510.1entrez:833138Gene3D:2.40.50.140GeneID:833138GO:GO:0003723
GO:GO:0005840GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009735GO:GO:0016020Gramene:AT5G30510.1
hmmpanther:PTHR10724hmmpanther:PTHR10724:SF7HOGENOM:HOG000232530InterPro:IPR003029InterPro:IPR012340InterPro:IPR022967KEGG:ath:AT5G30510
KO:K02945ncoils:CoilOMA:ISHEHIEPaxDb:Q93VC7Pfam:PF00575Pfscan:PS50126PhylomeDB:Q93VC7
ProMEX:Q93VC7PROSITE:PS50126Proteomes:UP000006548RefSeq:NP_850903.1SMART:SM00316SMR:Q93VC7STRING:3702.AT5G30510.1
SUPFAM:SSF50249TAIR:AT5G30510tair10-symbols:ARRPS1tair10-symbols:RPS1UniGene:At.24389UniProt:Q93VC7World-2DPAGE:0003:Q93VC7
Coordinates (TAIR10) chr5:-:11619262..11621223
Molecular Weight (calculated) 45113.00 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.11
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLAQQFSG LRCSPLSSSS RLSRRASKNF PQNKSASVSP TIVAAVAMSS GQTKERLELK KMFEDAYERC RTSPMEGVAF TVDDFAAAIE QYDFNSEIGT
101: RVKGTVFKTD ANGALVDISA KSSAYLSVEQ ACIHRIKHVE EAGIVPGMVE EFVIIGENES DDSLLLSLRN IQYELAWERC RQLQAEDVIV KAKVIGANKG
201: GLVALVEGLR GFVPFSQISS KAAAEELLEK EIPLKFVEVD EEQTKLVLSN RKAVADSQAQ LGIGSVVLGV VQSLKPYGAF IDIGGINGLL HVSQISHDRV
301: SDIATVLQPG DTLKVMILSH DRDRGRVSLS TKKLEPTPGD MIRNPKLVFE KAEEMAQTFR QRIAQAEAMA RADMLRFQPE SGLTLSSDGI LGPLGSELPD
401: DGVDLTVDDI PSAVDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)