AT5G29000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.2); Has 1716 Blast hits to 1701 proteins in 83 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 10; Plants - 1661; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:11022336..11024100 | ||||||||||||
| Molecular Weight (calculated) | 41425.30 Da | ||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||
| Length | 370 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNNPVPCQSV SGGNSGGYLF PSSSGYCNVS AVLPHGRNLQ NQPPVSTVPR DRLAMQDCPL IAQSSLINHH PQEFIDPLHE FFDFSDHVPV QNLQAESSGV 101: RVDSSVELHK KSEWQDWADQ LISVDDGSEP NWSELLGDSS SHNPNSEIPT PFLDVPRLDI TANQQQQMVS SEDQLSGRNS SSSVATSKQR MRWTPELHEA 201: FVEAVNQLGG SERATPKAVL KLLNNPGLTI YHVKSHLQKY RTARYKPETS EVTGEPQEKK MTSIEDIKSL DMKTSVEITQ ALRLQMEVQK RLHEQLEIQR 301: SLQLQIEKQG RYLQMMFEKQ QKIQDNKSSS SEASPKQCNG SFAEVEVGLE TLTGDQNESA SASRKRVRED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)