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AT5G28950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411206YeggNOG:KOG4585EMBL:CP002688EnsemblPlants:AT5G28950
EnsemblPlants:AT5G28950.1entrez:833021GeneID:833021Gramene:AT5G28950.1
hmmpanther:PTHR22930hmmpanther:PTHR22930:SF10InParanoid:F4KBG4InterPro:IPR027806
KEGG:ath:AT5G28950OMA:DTHIFAMPaxDb:F4KBG4Pfam:PF13359
PhylomeDB:F4KBG4PRIDE:F4KBG4ProteinModelPortal:F4KBG4Proteomes:UP000006548
RefSeq:NP_198247.1TAIR:AT5G28950UniGene:At.55091UniProt:F4KBG4
Coordinates (TAIR10) chr5:+:10992505..10993435
Molecular Weight (calculated) 17024.70 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.77
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKPEIAVPR KIRESTRLYP YFKDCVGAID DTHIFAMVSQ KKMPSFRNRK GDISQNMLAA CNFDVEFMYV LSGWEGSAHD SKVLNDALTR NSNRLPVPEE
101: DESAEEVVEE VNDNNDEVLT TQDQQREYAN QWRETIASNM WNNSIENS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)