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AT5G28900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.883
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28850.2); Has 645 Blast hits to 644 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Protein Annotations
BioGrid:18285eggNOG:ENOG410XRBKeggNOG:KOG2562EMBL:AF272706EMBL:AY063937EMBL:AY096482EMBL:CP002688
EnsemblPlants:AT5G28900EnsemblPlants:AT5G28900.1entrez:833013Gene3D:1.10.238.10GeneID:833013Genevisible:Q8VZQ4GO:GO:0005509
GO:GO:0005634GO:GO:0005737Gramene:AT5G28900.1hmmpanther:PTHR14095hmmpanther:PTHR14095:SF6HOGENOM:HOG000265086InParanoid:Q8VZQ4
IntAct:Q8VZQ4InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT5G28900KO:K11583OMA:MIGPANE
PaxDb:Q8VZQ4Pfam:PF13202Pfam:PF13499Pfam:Q8VZQ4Pfscan:PS50222PhylomeDB:Q8VZQ4PRIDE:Q8VZQ4
PRO:PR:Q8VZQ4ProMEX:Q8VZQ4PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q8VZQ4Proteomes:UP000006548Reactome:R-ATH-113501
Reactome:R-ATH-69231RefSeq:NP_198242.1scanprosite:PS00018SMR:Q8VZQ4STRING:3702.AT5G28900.1SUPFAM:SSF47473TAIR:AT5G28900
UniGene:At.25597UniGene:At.49079UniProt:Q8VZQ4
Coordinates (TAIR10) chr5:+:10925852..10929892
Molecular Weight (calculated) 62021.90 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.34
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)