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AT5G28590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT3G04590.2); Has 713 Blast hits to 708 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G28590EnsemblPlants:AT5G28590.1entrez:832956GeneID:832956GO:GO:0003677Gramene:AT5G28590.1
InterPro:IPR005175KEGG:ath:AT5G28590OMA:NDEHHTIPaxDb:F4K8J6Pfam:PF03479PRIDE:F4K8J6ProteinModelPortal:F4K8J6
Proteomes:UP000006548RefSeq:NP_198211.1SUPFAM:SSF117856TAIR:AT5G28590UniGene:At.55073UniProt:F4K8J6
Coordinates (TAIR10) chr5:-:10579446..10581559
Molecular Weight (calculated) 22537.80 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.39
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPMYYKRLN RLKSPTIRFS VALSKTGQCF TPHIVNITPG EDVAEKIVLF TQQSKHQLCV LSASGSISNA SLSHLASGTS HGGKTGGLSV CLSNSDGQIF
101: GGGVGGLLKA AGPVQVVLGT FQLEKKKDGR NGAKGDDASG SRNMLPSPSG TESLLGYHPD MESSGRNPND EHHTITSSAL GGGAHFMMKP PQGMHMTHAR
201: PSEWGGTGYD LSGKSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)