AT5G28520.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G33790.2); Has 1391 Blast hits to 637 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1383; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:10493110..10494852 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50208.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQKLEAIGR GLQWDDSSDH DNVTKILVRG GREGIQYVKF DYVKSGQPQT GLIHGLSGRG GFTQTFEIDQ KDEHLVSVEG YYDVTKGVIQ ALKFKTNKKT 101: SEMIGYDDTG IKLSLEVKGK KIIGFHGYAE TNLNSLGAYF TTTGPIGLNP QVGHIKLAYQ GGGGGIPWDH GPNHNGVKRV SFIFDENEIR QWRVDYDDGG 201: VIRQYEPING YDMFEVKEYP TEYIISVECT YDDVIPRSGR RMIRSIMFKT SKGRVSPIFG YPAARKFVLE NNGGALIGFH GRVGAGIDAL GAYFSSFIPS 301: PPPPSPEKLQ PEGGEAVGDP WDDGIFNGVR EIHLEDGEGI ALKFVYDKDV QVTELKVHGE PSGIGFNEFK LDYPSEYITT VEGFWDKTSG NERGVITRLR 401: FTTNKQTFRP VGLESTTSFS LGKEGYKIVG FHGNSSTDKL HQLGVYVVPI TRE |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)