AT5G28080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
WNK9; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 1 (TAIR:AT3G04910.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10090217..10091679 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46782.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFYASWVDT DNRNINFVTE MFTSGTLRQY RLKHKRVNIR AVKNWCRQIL RGLNYLHTHD PPVIHRDLKC DNIFINGNQG EVKIGDLGLA ACLQHSHAAH 101: CVGTPEFMAP EVYKEEYNQL VDIYSFGMCV LEMVTFDYPY SECSHPAQIY KRVISGKKPD GLDKVKDPEV RGFIEKCLAT VSLRLSACEL LDDHFLCIDE 201: SDMRRVESEK GLIDEAGTPL RHSYHIPHYS NGYYSLYNQN QWDYNGDETV ESHEIDLLEF QNDDDEEEED KRFGSVDISI KGKRRDNGDG LFLRLKTVNK 301: EGCVRNIYFP FDIETDTAIS VAREMVEELE MDDRDVTKIA NMIDGEIASL VPNWSIFCSS ESNRSSVGSV MDFNEMQCGR DGCEEKHGRF EEITFEITVN 401: DSDEED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)