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AT5G28060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S24e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT3G04920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18152eggNOG:COG2004eggNOG:KOG3424EMBL:AC007627EMBL:AF386992EMBL:AY072478EMBL:AY086740
EMBL:CP002688EnsemblPlants:AT5G28060EnsemblPlants:AT5G28060.1entrez:832878Gene3D:3.30.70.330GeneID:832878Genevisible:Q8LC83
GO:GO:0000166GO:GO:0003735GO:GO:0005618GO:GO:0006412GO:GO:0016020GO:GO:0022626GO:GO:0022627
Gramene:AT5G28060.1HAMAP:MF_00545hmmpanther:PTHR10496HOGENOM:HOG000186306InParanoid:Q8LC83IntAct:Q8LC83InterPro:IPR001976
InterPro:IPR012677InterPro:IPR012678InterPro:IPR018098KEGG:ath:AT5G28060KO:K02974OMA:KLHKVADPANTHER:PTHR10496
PaxDb:Q8LC83Pfam:PF01282Pfam:Q8LC83PhylomeDB:Q8LC83PRIDE:Q8LC83PRO:PR:Q8LC83ProDom:PD006052
PROSITE:PS00529ProteinModelPortal:Q8LC83Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_198158.1scanprosite:PS00529SMR:Q8LC83
STRING:3702.AT5G28060.1SUPFAM:SSF54189TAIR:AT5G28060UniGene:At.13930UniGene:At.20505UniProt:Q8LC83
Coordinates (TAIR10) chr5:-:10069791..10070792
Molecular Weight (calculated) 15420.00 Da
IEP (calculated) 11.24
GRAVY (calculated) -0.87
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)