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AT5G28050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytidine/deoxycytidylate deaminase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G05300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1839-MONOMEReggNOG:COG0590eggNOG:KOG1018EMBL:AY039873EMBL:AY133663EMBL:CP002688EnsemblPlants:AT5G28050
EnsemblPlants:AT5G28050.1entrez:832875ExpressionAtlas:Q94BU8GeneID:832875GO:GO:0008270GO:GO:0016787Gramene:AT5G28050.1
hmmpanther:PTHR11079hmmpanther:PTHR11079:SF90HOGENOM:HOG000085049IntAct:Q94BU8InterPro:IPR002125InterPro:IPR016192InterPro:IPR016193
Pfam:PF00383Pfscan:PS51747PhylomeDB:Q94BU8PROSITE:PS00903PROSITE:PS51747Proteomes:UP000006548RefSeq:NP_198157.1
scanprosite:PS00903SMR:Q94BU8STRING:3702.AT5G28050.2SUPFAM:SSF53927TAIR:AT5G28050UniGene:At.25349UniProt:Q94BU8
Coordinates (TAIR10) chr5:-:10044209..10045755
Molecular Weight (calculated) 20002.70 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.16
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAKVEAKD GTISVASAFS GHQQAVHDSD HKFLTQAVEE AYKGVDCGDG GPFGAVIVHN NEVVASCHNM VLKYTDPTAH AEVTAIREAC KKLNKIELSE
101: CEIYASCEPC PMCFGAIHLS RLKRLVYGAK AEAAIAIGFD DFIADALRGT GVYQKSSLEI KKADGNGAAI AEQVFQNTKE KFRLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)