AT5G27970.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: HOPM interactor 7 (TAIR:AT3G43300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:10004720..10015429 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 180494.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||
| Length | 1630 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALVAALEAD LRALSAEARR RYPAVKDGAE HAILKLRSSS SASDLSSNED ILRIFLMACG VRNTKLSVIG LSCLQKLISH DAVEPSSLKE ILYTLKDAKQ 0101: LSDAVFPYLQ HSEMAEENIQ LKTLQTILII FQSRLHPETE DNMVLGLSIC LTLLDNNRPP SVYNTAAATF RQAVALIFDQ VVSAESLPMP KFGSSSQTAR 0201: TGSVTGDLSQ NINNSGPLEK DVIGGRLTIR DTLSETGKLG LRLLEDLTAS AAGGSAAWLH VTSLPRTFSL ELIEFVLSNY ISVFKILLPY EQVLRHQICS 0301: LLMTSLRTSS ELEGEMVEPY FRRLVLRSVA HIIRLYSSSL ITECEVFLSM LVKATFLDLP LWHRILVLEI LRGFCVEART LRILFQNFDM HPKNTNVVES 0401: MVKALARVVS SIQFQETSEE SLAAVAGMFS SKAKGIEWIL DNDASSAAVL VASEAHAITL AIEGLLGVVF TVATLTDEAV DVGELESPRY EHLPSSDYTG 0501: KTSLLCISMV DSLWLTILDA FSLILSRSQG EAIVLEILKG YQAFTQACGV LHAVEPLNSF LASLCKFTIV LPTDVERKSV VQSPVSKRSE VQVDLKDVIV 0601: LTPKNVQALR TLFNIAHRLH NVLGPSWVLV LETLAALDRA IHSPHATTQE VATAVPKLTR EPSRQYADFS ILSSLNSQLF ESSALMQVSS VKSLLSALHM 0701: LSHQSMTETS GSVSSASSKQ IGSISFSVDR MISILVNNLH RVEPLWDQVV GHFLELAEHS NQNLRNMALD ALDQSICAVL GSEQFGEDPA RSRDATLDVD 0801: SKSTEVKSVE CAVLSSLRVL YFSAQKADVR VGSLKILLHV LERCGEKLYY SWSSILEMLR SVADASEKDV ATLGFQSLRV IMSDGLPTLP EDCLHVCIDV 0901: TGAYSAQKTD LNISLTAIGL LWTLTDFVAK GLHHGSLVEK GSGFNNADST PQQTNGEDGE KHMGSNSGKS DYEAPIQVVN HEKLLFLVFS LIQKLVDDER 1001: PEVRNSAVRT FFQILGSHGN KLSKSMWEDC LWNYIFPMLD GASHKAATSS KDEWQGKEIG TRGGKAVHML IHHSRNSAQK QWDETFVLVL GGIARLFRSY 1101: FPLLESLPNF WSGWESLLAF VKKSIFNGSK EVSLAAINCL QTAVVSHCVK GNLQLRYLNS VLDVYELVFQ KSSSYTGDTA AKVKQEILHG LGELYVQSSK 1201: MFDDKMYMQL LGIVDLAIKQ AIINSENFET EYGHVPPVLR HVLEILPSLG PPEHLSSMWL ILLREFLHYL PRVDSVLPND EGSEVLEQKA DASSETIPTT 1301: RITTNMFAEK LIPALIELLL QAPAVEKYIL FPEVIQNLRR CMMTRRDNPD GSLWKVAAEG FNRLLVEDVK LCSVGGETEL KISKTARIRI WKEIGDVYDI 1401: FLVGYCGRAL SSNSLPAATL KANETLEIAL LNGLGDIILK STVDAPREVL ERLVSTLDRC ASRTCSLPVE TVELMPAHCS RFSLTCLQKL FSLSSSETEN 1501: WHSTRAEVSK ISITTLMARC EFILSRFLID ENNLGNRPIP TARLEEIIFT LQELYRLSIH PEVASVLPLQ PYLKNVLRED NRDTRAHLLV LFPSLCEIVL 1601: SREMRVRELV QILLRAVATE LGLEKVSLSS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)