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AT5G27950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.684
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G55550.1); Has 10282 Blast hits to 9806 proteins in 314 species: Archae - 0; Bacteria - 8; Metazoa - 4569; Fungi - 1388; Plants - 1826; Viruses - 0; Other Eukaryotes - 2491 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1445-MONOMEReggNOG:COG5059eggNOG:KOG0239EMBL:AF462865EMBL:AK227022EMBL:BT002617EMBL:CP002688
EnsemblPlants:AT5G27950EnsemblPlants:AT5G27950.1entrez:832864Gene3D:3.40.850.10GeneID:832864GO:GO:0003777GO:GO:0005524
GO:GO:0005874GO:GO:0007018Gramene:AT5G27950.1hmmpanther:PTHR24115hmmpanther:PTHR24115:SF528HOGENOM:HOG000116164InterPro:IPR001752
InterPro:IPR027417InterPro:IPR027640KEGG:ath:AT5G27950ncoils:CoilOMA:RCNLNIQPANTHER:PTHR24115Pfam:PF00225
Pfscan:PS50067PhylomeDB:Q8W0Y9PRINTS:PR00380PROSITE:PS50067Proteomes:UP000006548RefSeq:NP_198147.2SMART:SM00129
SMR:Q8W0Y9STRING:3702.AT5G27950.1SUPFAM:SSF52540TAIR:AT5G27950UniGene:At.28657UniProt:Q8W0Y9
Coordinates (TAIR10) chr5:+:9984774..9987493
Molecular Weight (calculated) 70300.40 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.54
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MLISAEKGEI LIPQSPLSSE SVVPLVYTDV NVVPEHESNQ LEKSISNLEE EVFELKLKLK SLDEKRKQVL NKIIDTKGSI RVFCRVRPFL LTERRPIREP
101: VSFGPDNVVI RSAGSSKEFE FDKVFHQSAT QEEVFGEVKP ILRSALDGHN VCVLAYGQTG TGKTFTMDGT SEQPGLAPRA IKELFNEASM DQTHSVTFRM
201: SMLEIYMGNL KDLLSARQSL KSYEASAKCN LNIQVDSKGS VEIEGLTEVE VMDFTKARWW YNKGRRVRST SWTNVNETSS RSHCLTRITI FRRGDAVGSK
301: TEVSKLWMID LGGSERLLKT GAIGQTMDEG RAINLSLSAL GDVIAALRRK KGHVPYRNSK LTQILKDSLG TRSKVLMLVH ISPRDEDVGE TICSLSFTKR
401: ARAVESNRGL TAELQKLREK KISELEEEME ETQEGCKKIK ARLQEVECLV NEHKKLFWIT NDKYLEDIEK KAISPLDHLK DTDATPISSD KLVKIRKSSG
501: FVPRFMTSTV ASRQRQTMSE KEINAKAQSI RSVAKNLTQF STSQSLSLSD SRSKALLRRS YTKPLQAAAN SGTPPETPKR HIKDNSLQRK NMNDTSSPRS
601: KMVTSSDPNV RAKLCHHKRR MSSLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)