AT5G27950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.921 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G55550.1); Has 10282 Blast hits to 9806 proteins in 314 species: Archae - 0; Bacteria - 8; Metazoa - 4569; Fungi - 1388; Plants - 1826; Viruses - 0; Other Eukaryotes - 2491 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9984774..9987493 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70300.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 625 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLISAEKGEI LIPQSPLSSE SVVPLVYTDV NVVPEHESNQ LEKSISNLEE EVFELKLKLK SLDEKRKQVL NKIIDTKGSI RVFCRVRPFL LTERRPIREP 101: VSFGPDNVVI RSAGSSKEFE FDKVFHQSAT QEEVFGEVKP ILRSALDGHN VCVLAYGQTG TGKTFTMDGT SEQPGLAPRA IKELFNEASM DQTHSVTFRM 201: SMLEIYMGNL KDLLSARQSL KSYEASAKCN LNIQVDSKGS VEIEGLTEVE VMDFTKARWW YNKGRRVRST SWTNVNETSS RSHCLTRITI FRRGDAVGSK 301: TEVSKLWMID LGGSERLLKT GAIGQTMDEG RAINLSLSAL GDVIAALRRK KGHVPYRNSK LTQILKDSLG TRSKVLMLVH ISPRDEDVGE TICSLSFTKR 401: ARAVESNRGL TAELQKLREK KISELEEEME ETQEGCKKIK ARLQEVECLV NEHKKLFWIT NDKYLEDIEK KAISPLDHLK DTDATPISSD KLVKIRKSSG 501: FVPRFMTSTV ASRQRQTMSE KEINAKAQSI RSVAKNLTQF STSQSLSLSD SRSKALLRRS YTKPLQAAAN SGTPPETPKR HIKDNSLQRK NMNDTSSPRS 601: KMVTSSDPNV RAKLCHHKRR MSSLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)