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AT5G27930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G05640.2); Has 5854 Blast hits to 5851 proteins in 292 species: Archae - 2; Bacteria - 6; Metazoa - 1439; Fungi - 687; Plants - 2519; Viruses - 5; Other Eukaryotes - 1196 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G27930-MONOMERBioCyc:ARA:GQT-1455-MONOMEREC:3.1.3.16eggNOG:COG0631eggNOG:KOG0698EMBL:AB079668EMBL:AC007627
EMBL:AK118436EMBL:AK228402EMBL:AK229967EMBL:AY086281EMBL:BT026463EMBL:CP002688EnsemblPlants:AT5G27930
EnsemblPlants:AT5G27930.1EnsemblPlants:AT5G27930.2entrez:832860Gene3D:3.60.40.10GeneID:832860Genevisible:Q0WRB2GO:GO:0004722
GO:GO:0046872Gramene:AT5G27930.1Gramene:AT5G27930.2hmmpanther:PTHR13832hmmpanther:PTHR13832:SF198HOGENOM:HOG000233897InParanoid:Q0WRB2
InterPro:IPR001932InterPro:IPR015655KEGG:ath:AT5G27930OMA:CDAKEAAPANTHER:PTHR13832PaxDb:Q0WRB2Pfam:PF00481
Pfam:Q0WRB2Pfscan:PS51746PhylomeDB:Q0WRB2PRIDE:Q0WRB2PRO:PR:Q0WRB2PROSITE:PS51746ProteinModelPortal:Q0WRB2
Proteomes:UP000006548RefSeq:NP_568503.1RefSeq:NP_851086.1SMART:SM00332SMR:Q0WRB2STRING:3702.AT5G27930.1SUPFAM:SSF81606
TAIR:AT5G27930UniGene:At.20140UniProt:Q0WRB2
Coordinates (TAIR10) chr5:-:9958199..9960219
Molecular Weight (calculated) 41585.60 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.33
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHFSSMFNG LARSFSIKKV KNNNGNCDAK EAADEMASEA KKKELILKSS GYVNVQGSNN LASLFSKRGE KGVNQDCALV WEGFGCQEDM IFCGIFDGHG
101: PWGHYVAKQV RNSMPLSLLC NWQKILAQAT LEPELDLEGS NKKISRFDIW KQSYLKTCAT VDQELEHHRK IDSYYSGTTA LTIVRQGEVI YVANVGDSRA
201: VLAMESDEGS LVAVQLTLDF KPNLPQEKER IIGCKGRVFC LDDEPGVHRV WQPDAETPGL AMSRAFGDYC IKEYGLVSVP EVTQRHISTK DHFIILASDG
301: IWDVISNQEA IEIVSSTAER PKAAKRLVEQ AVRAWKKKRR GYSMDDMSVV CLFLHSSSSS SLSQHHHAMT ILK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)