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AT5G27770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21841088 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L22e protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L22e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: Ribosomal L22e protein family (TAIR:AT3G05560.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18113eggNOG:ENOG4111UVJeggNOG:KOG3434EMBL:AC069556EMBL:AF324721EMBL:AF326858EMBL:AF339681
EMBL:AY085926EMBL:BT003099EMBL:CP002688EnsemblPlants:AT5G27770EnsemblPlants:AT5G27770.1entrez:832839ExpressionAtlas:Q9FE58
GeneID:832839Genevisible:Q9FE58GO:GO:0003735GO:GO:0005730GO:GO:0005829GO:GO:0005886GO:GO:0006412
GO:GO:0016020GO:GO:0022625Gramene:AT5G27770.1hmmpanther:PTHR10064hmmpanther:PTHR10064:SF4HOGENOM:HOG000198396InParanoid:Q9FE58
InterPro:IPR002671KEGG:ath:AT5G27770KO:K02891OMA:CSSPANDPANTHER:PTHR10064PaxDb:Q9FE58Pfam:PF01776
Pfam:Q9FE58PhylomeDB:Q9FE58PRIDE:Q9FE58PRO:PR:Q9FE58ProteinModelPortal:Q9FE58Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_198129.1SMR:Q9FE58
STRING:3702.AT5G27770.1TAIR:AT5G27770UniGene:At.16919UniProt:Q0WRH6UniProt:Q9FE58
Coordinates (TAIR10) chr5:+:9836166..9837113
Molecular Weight (calculated) 14047.90 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.68
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRGNAAAAK GKKKGVSFTI DCSKPVDDKI MEIASLEKFL QERIKVGGKA GALGDSVSIT REKSKITVTA DGQFSKRYLK YLTKKYLKKH NVRDWLRVIA
101: ANKDRNLYEL RYFNIAENEA EEED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)