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AT5G27760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Hypoxia-responsive family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hypoxia-responsive family protein; CONTAINS InterPro DOMAIN/s: Hypoxia induced protein, conserved region (InterPro:IPR007667); BEST Arabidopsis thaliana protein match is: Hypoxia-responsive family protein (TAIR:AT3G05550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J08CeggNOG:ENOG410Y8QTEMBL:AY084446EMBL:BT004245EMBL:BT005396EMBL:CP002688EnsemblPlants:AT5G27760
EnsemblPlants:AT5G27760.1entrez:832838GeneID:832838GO:GO:0016021Gramene:AT5G27760.1hmmpanther:PTHR28018hmmpanther:PTHR28018:SF1
HOGENOM:HOG000239207IntAct:Q8LG60InterPro:IPR007667KEGG:ath:AT5G27760OMA:YDHKSGAPfam:PF04588Pfscan:PS51503
PhylomeDB:Q8LG60PROSITE:PS51503Proteomes:UP000006548RefSeq:NP_198128.1STRING:3702.AT5G27760.1TAIR:AT5G27760UniGene:At.30789
UniProt:Q8LG60
Coordinates (TAIR10) chr5:+:9830396..9831559
Molecular Weight (calculated) 10656.00 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.19
Length 96 amino acids
Sequence (TAIR10)
(BLAST)
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)