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AT5G27700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S21e
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
BioGrid:18106eggNOG:ENOG4112266eggNOG:KOG3486EMBL:AC069556EMBL:AY080873EMBL:AY089203EMBL:BT029352
EMBL:BX831050EMBL:CP002688EnsemblPlants:AT5G27700EnsemblPlants:AT5G27700.1entrez:832832GeneID:832832Genevisible:Q3E902
GO:GO:0003735GO:GO:0006412GO:GO:0022627Gramene:AT5G27700.1hmmpanther:PTHR10442HOGENOM:HOG000183557InParanoid:Q3E902
InterPro:IPR001931InterPro:IPR018279KEGG:ath:AT5G27700KO:K02971ncoils:CoilOMA:CGRIRAQPANTHER:PTHR10442
PaxDb:Q3E902Pfam:PF01249Pfam:Q3E902PIRSF:PIRSF002148PRIDE:Q3E902PRO:PR:Q3E902ProDom:PD006584
PROSITE:PS00996ProteinModelPortal:Q3E902Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_198122.4scanprosite:PS00996SMR:Q3E902
STRING:3702.AT5G27700.1TAIR:AT5G27700UniGene:At.21563UniProt:Q3E902
Coordinates (TAIR10) chr5:-:9807541..9808048
Molecular Weight (calculated) 9113.74 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.58
Length 82 amino acids
Sequence (TAIR10)
(BLAST)
1: MQNEEGQVTE LYIPRKCSAT NRLITSKDHA SVQLNIGHLD ANGLYTGQFT TFALCGFVRA QGDADSGVDR LWQKKKVEAK QN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)