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AT5G27690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:BT003873EMBL:BT005500EMBL:CP002688EnsemblPlants:AT5G27690EnsemblPlants:AT5G27690.1
entrez:832831GeneID:832831GO:GO:0030001GO:GO:0046872Gramene:AT5G27690.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF75
HOGENOM:HOG000006162IntAct:Q84J88InterPro:IPR006121KEGG:ath:AT5G27690OMA:PLRYTTWPfam:PF00403Pfscan:PS50846
PROSITE:PS50846Proteomes:UP000006548RefSeq:NP_198121.1SMR:Q84J88STRING:3702.AT5G27690.1SUPFAM:SSF55008TAIR:AT5G27690
UniGene:At.30792UniProt:Q84J88
Coordinates (TAIR10) chr5:+:9803796..9805036
Molecular Weight (calculated) 38702.80 Da
IEP (calculated) 6.87
GRAVY (calculated) -1.07
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLGTEIKSD TRQEEQRHVF EDYPEPLRYT TWVLRVSIHC EGCKRKIKKI LSKIDGVYTT NIDVKQQKVT VIGNVEPEIL IKKIMKAGRH AELWPTSMEN
101: NINNDCNYQK KPKKDNEETS GDEDDDENNN NNNGGGDVGG GGGGGGGNFD QVKQVVTFVN GQLQPQGDGA PKKKKKKKKK KKSLGNTTVV MEGGGGGGGG
201: GGPPQNDGPP ETVIYSAPQD HHIIHGPPPH LHHHQQQNHP YPTVHSPPRH HPQQMYGPGP GLPPPSFYHT QPQTAPSYTV SYNTVHGPIN NGGNETASYY
301: TAPPSHPTSY YSYEYVDTGY ESPPPEFYSY RSQPSESFES LSEGNPNSCC VM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)