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AT5G27660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g27660-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g27660-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DegP protease 14; Trypsin family protein with PDZ domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G27660-MONOMEREC:3.4.21.-eggNOG:COG0265eggNOG:KOG1320EMBL:AC007478EMBL:AC069556EMBL:CP002688
EnsemblPlants:AT5G27660EnsemblPlants:AT5G27660.1entrez:832828Gene3D:2.30.42.10GeneID:832828Genevisible:Q3E6S8GO:GO:0004252
Gramene:AT5G27660.1hmmpanther:PTHR22939hmmpanther:PTHR22939:SF95HOGENOM:HOG000223641InParanoid:Q3E6S8InterPro:IPR001478InterPro:IPR001940
InterPro:IPR009003KEGG:ath:AT5G27660MEROPS:S01.A08PaxDb:Q3E6S8Pfam:PF13180Pfam:PF13365Pfam:Q3E6S8
Pfscan:PS50106PRIDE:Q3E6S8PRINTS:PR00834PRO:PR:Q3E6S8PROSITE:PS50106ProteinModelPortal:Q3E6S8Proteomes:UP000006548
RefSeq:NP_198118.3SMART:SM00228SMR:Q3E6S8STRING:3702.AT5G27660.1SUPFAM:SSF50156SUPFAM:SSF50494TAIR:AT5G27660
UniGene:At.48106UniProt:Q3E6S8
Coordinates (TAIR10) chr5:-:9789835..9792235
Molecular Weight (calculated) 46034.70 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.04
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNFLRRAVS SSKRSELIRI ISVATATSGI LYASTNPDAR TRVSLAIPES VRESLSLLPW QISPGLIHRP EQSLFGNFVF SSRVSPKSEA PINDEKGVSV
101: EASDSSSKPS NGYLGRDTIA NAAARIGPAV VNLSVPQGFH GISMGKSIGS GTIIDADGTI LTCAHVVVDF QNIRHSSKGR VDVTLQDGRT FEGVVVNADL
201: QSDIALVKIK SKTPLPTAKL GFSSKLRPGD WVIAVGCPLS LQNTVTAGIV SCVDRKSSDL GLGGKHREYL QTDCSINAGN SGGPLVNLDG EVIGVNIMKV
301: LAADGLGFSV PIDSVSKIIE HFKKSGRVIR PWIGLKMVEL NNLIVAQLKE RDPMFPDVER GVLVPTVIPG SPADRAGFKP GDVVVRFDGK PVIEIMDDRV
401: GKRMQTCETR RRLRQFCNGN FTIFNQMC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)