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AT5G27610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DIRP ;Myb-like DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ALWAYS EARLY 1 (ALY1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 727 Blast hits to 616 proteins in 109 species: Archae - 0; Bacteria - 13; Metazoa - 449; Fungi - 28; Plants - 134; Viruses - 1; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
BioGrid:18097eggNOG:ENOG410YA1TeggNOG:KOG1019EMBL:AB493764EMBL:AC007478EMBL:AJ583498EMBL:CP002688
EnsemblPlants:AT5G27610EnsemblPlants:AT5G27610.1entrez:832823GeneID:832823Genevisible:Q6A331GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0007049GO:GO:0017053Gramene:AT5G27610.1hmmpanther:PTHR21689hmmpanther:PTHR21689:SF3HOGENOM:HOG000029798
InParanoid:Q6A331InterPro:IPR009057InterPro:IPR010561InterPro:IPR033471iPTMnet:Q6A331KEGG:ath:AT5G27610ncoils:Coil
OMA:NMPIYREPANTHER:PTHR21689PaxDb:Q6A331Pfam:PF06584Pfam:Q6A331PhylomeDB:Q6A331PRIDE:Q6A331
PRO:PR:Q6A331ProteinModelPortal:Q6A331Proteomes:UP000006548RefSeq:NP_198113.2SMART:SM01135STRING:3702.AT5G27610.1SUPFAM:SSF46689
TAIR:AT5G27610tair10-symbols:ALY1tair10-symbols:ATALY1UniGene:At.30796UniProt:Q6A331
Coordinates (TAIR10) chr5:+:9764852..9769706
Molecular Weight (calculated) 109093.00 Da
IEP (calculated) 9.12
GRAVY (calculated) -0.70
Length 971 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPTRKSKSV NKRFTNEASP DINFGSASKT KQRKKKLADK LGPQWTKREL VRFYDAYRKY VGDWKKVAAA VRNNRSVEMV ETLFCMNRAY LSLPEGTASV
101: AGLIAMMTDH YSVMEGSESE GEDHDASEVT RKHLKRKRPQ VLPSDFREEV VPPHSVASVE GCLSFLKQTQ AYEKRQRATG KRTPRFLVAI THERDDIEDF
201: SPPNKRAKKQ LDADDDASRR GGGSPYRRKE LSEITPTRLR KTSQAQEAQF KHPDSSMFEN GVRDRWHKKG AADRDGALLM DMEGLVTQKE KIVRVEEAEG
301: NYSDDDDGLG ALKTLAEMSA SLAPAGLLES ESSPHWEEER KTNNVDKKSN TLETVSTSHH REKAKQAGLE DNLLHAISAP DKRKPKSVPE SVDGNVVSIE
401: ELRTSSRKRK PKFQVLDVVA PKESTQDKSL YTKESAEVDS LKTPVKARRS SQGPAKQLKT AKTTVESSSA SDKKITGPDA VVPATQVSAS GPETLPQKPP
501: NRRKISLKKS LQERAKSLET THDKPRSFKK LSEHELLQEK LSNCLSYPLV RRWCIYEWFY SAIDYPWFAK MEFTDYLNHV GLGHAPRLTR VEWSVIKSSL
601: GRPRRLSQRF LQDERDKLQE YRESVRKHYT ELRGCATGVL HTDLARPLSV GNRVIAIHPK TREIRDGKIL TVDHNKCNVL FDELGVELVM DIDCMPLNPL
701: EYMPEGLRRQ IDKCLAICKE ARLNRHPSSD ASVLFSPSVL ENVNFSMNPP PAKQDDIREP VLYGKVIATN TTDQSIVINS KVTGTEIQRT LALQHTSDAQ
801: EMEPEMIEIV IESKSIAQAM VDAAIKAASS GKNNEDSENM VHQALSSIGE HQPLDNSIVP GIKHQEYTNG SLDHHSLNTA EPMSNGFISQ EGSGKNKTPM
901: PSELITSCVA SWLMMQMISK KQYPPADVAQ LMDTVVNDLQ PRCPQNMPIY REIQTCMGLI KTQIMALVRT S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)