AT5G27490.1::SUBA5

AT5G27490.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
golgi 0.994
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:25900983 (2015): Golgi PMID:25900983 (2015): Golgi trans-Golgi network	PMID:24833385 (2014): AT5G42200.1:None: PMID:24833385 (2014): AT4G37445.1:None: PMID:24833385 (2014): AT2G41705.1:None: PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT5G11890.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT4G20790.1:None: PMID:24833385 (2014): AT1G29060.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G01620.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:21798944 (2011): AT4G30260.1:Y2H:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT3G20560.1 endoplasmic reticulum [7.67] AT2G34050.1 mitochondrion [6.96] AT2G35190.1 plasma membrane [6.19] AT1G09330.1 golgi [6.11] AT3G05280.1 golgi [6.11] AT4G12650.1 golgi [6.01] AT4G17890.1 golgi [6.01] AT1G30300.1 golgi [5.87] AT4G22910.1 golgi [5.83] AT5G50420.1 plasma membrane [5.79]	AT3G12180.1 endoplasmic reticulum AT3G17000.1 endoplasmic reticulum AT1G17280.1 golgi AT1G29060.1 golgi AT4G30850.1 golgi AT4G37680.1 golgi AT2G26180.1 nucleus AT1G01620.1 plasma membrane AT2G41705.1 plasma membrane AT4G20790.1 plasma membrane AT4G37445.1 plasma membrane AT5G06320.1 plasma membrane AT5G11890.1 plasma membrane AT5G42200.1 plasma membrane AT5G49540.1 vacuole

Description (TAIR10)

protein_coding : Integral membrane Yip1 family protein

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 530 Blast hits to 529 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 113; Plants - 90; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG4110TJR	eggNOG:KOG3114	EMBL:CP002688	EnsemblPlants:AT5G27490
EnsemblPlants:AT5G27490.1	entrez:832808	GeneID:832808	GO:GO:0016021
Gramene:AT5G27490.1	hmmpanther:PTHR12822	InParanoid:F4K4B8	InterPro:IPR006977
KEGG:ath:AT5G27490	OMA:NSAGERW	PaxDb:F4K4B8	Pfam:PF04893
PRIDE:F4K4B8	ProteinModelPortal:F4K4B8	Proteomes:UP000006548	RefSeq:NP_198101.2
STRING:3702.AT5G27490.1	TAIR:AT5G27490	TMHMM:TMhelix	UniGene:At.30804
UniProt:F4K4B8

Coordinates (TAIR10)

chr5:-:9703130..9704653

Molecular Weight (calculated)

31163.70 Da

IEP (calculated)

7.54

GRAVY (calculated)

0.36

Length

282 amino acids

Sequence (TAIR10)
(BLAST)

001: MMMSGGSYTN IDHQKVSGSV PAVPDPGHVT VKFADSNLQT FPPSATQGKI SGGTNPPRDA DDTFSRPVNG TTDEPQSSGW LHRFTVGAYK PYFDVDTSDV
101: VERLKESLFP FRGTFTEKTA NNPDLYGPFW ICTTLIFVAA SIGTFVTYIA HKLKKQEWNY DINLVTWSAG VFYGYVTIVP LALYVVLKYF SAPSGLVQLF
201: CLYGYSLFVF IPALCLSVVP LEIFRWVIAG LAGFMSATFV ALNLKAHINS AGERWFLIVV SIFLLQLALS VVLKLYLFTV TV