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AT5G27470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : seryl-tRNA synthetase / serine--tRNA ligase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase (TAIR:AT1G11870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G27470-MONOMERDNASU:832806EC:6.1.1.11eggNOG:COG0172
eggNOG:KOG2509EMBL:AC007123EMBL:AF360352EMBL:AY051054
EMBL:CP002688EMBL:Z70313EnsemblPlants:AT5G27470EnsemblPlants:AT5G27470.1
entrez:832806Gene3D:1.10.287.40GeneID:832806Genevisible:Q39230
GO:GO:0004828GO:GO:0005524GO:GO:0005829GO:GO:0006434
GO:GO:0046686GO:GO:0097056Gramene:AT5G27470.1gramene_pathway:6.1.1.11
gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR11778hmmpanther:PTHR11778:SF7HOGENOM:HOG000035937
InParanoid:Q39230InterPro:IPR002314InterPro:IPR002317InterPro:IPR006195
InterPro:IPR010978InterPro:IPR015866KEGG:00970+6.1.1.11KEGG:ath:AT5G27470
KO:K01875ncoils:CoilOMA:VGWSPCFPANTHER:PTHR11778
PaxDb:Q39230Pfam:PF00587Pfam:PF02403Pfam:Q39230
Pfscan:PS50862PhylomeDB:Q39230PIR:S71293PIRSF:PIRSF001529
PRIDE:Q39230PRINTS:PR00981PRO:PR:Q39230PROSITE:PS50862
ProteinModelPortal:Q39230Proteomes:UP000006548RefSeq:NP_198099.1SMR:Q39230
STRING:3702.AT5G27470.1SUPFAM:SSF46589SUPFAM:SSF55681TAIR:AT5G27470
TIGRfam:TIGR00414TIGRFAMs:TIGR00414UniGene:At.24387UniPathway:UPA00906
UniProt:Q39230
Coordinates (TAIR10) chr5:+:9695087..9697154
Molecular Weight (calculated) 51631.70 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.54
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDINLFREE KGNNPEIIRE SQRRRFASVE IVDEIIKLDK EWRQRQFEVD SFRKEFNKLN KQVAQLKIKK EDASEIIQQT EKNKQDSTAK EAEVREAYAA
101: LKAKLEQVGN LVHDSVPVDK DEANNLVIKL WGEKRFSTPG LKLKNHVDLV ELLGIADTKR GAEIAGARGF FLKGDGLMLN QALINFGLTF LKKRGFTGLQ
201: PPFFMRKDVM AKCAQLAQFD EELYKVTGEG DDKYLIATAE QPLCAYHIDE WIHPTELPLR YAGYSSCFRK EAGSHGRDTL GIFRVHQFEK IEQFCITGPN
301: ENASWEMLDE MMKNSEDFYQ ALKLPYQIVS IVSGALNDAA AKKYDLEAWF PSSETFRELV SCSNCTDYQA RRLEIRYGQK KSNEQTKQYV HMLNSTLTAT
401: ERTICCILEN YQREDGVDIP EVLQPFMGGE TFLPFKAKPV VADTKGKKSK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)