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AT5G27460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007123EMBL:BX829458
EMBL:CP002688EnsemblPlants:AT5G27460EnsemblPlants:AT5G27460.1entrez:832805
Gene3D:1.25.40.10GeneID:832805Genevisible:Q3E911Gramene:AT5G27460.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF578HOGENOM:HOG000239576InParanoid:Q3E911
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G27460OMA:VFKEMVN
PaxDb:Q3E911Pfam:PF01535Pfam:PF13812Pfam:Q3E911
Pfscan:PS51375PhylomeDB:Q3E911PRIDE:Q3E911PRO:PR:Q3E911
PROSITE:PS51375ProteinModelPortal:Q3E911Proteomes:UP000006548RefSeq:NP_198098.1
SMR:Q3E911STRING:3702.AT5G27460.1SUPFAM:SSF48452TAIR:AT5G27460
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.30805UniProt:Q3E911
Coordinates (TAIR10) chr5:-:9693262..9694815
Molecular Weight (calculated) 56204.70 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.14
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)