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AT5G27420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : carbon/nitrogen insensitive 1
Curator
Summary (TAIR10)
Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.
Computational
Description (TAIR10)
carbon/nitrogen insensitive 1 (CNI1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18075EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC007123EMBL:AK226995EMBL:AY084377
EMBL:CP002688EnsemblPlants:AT5G27420EnsemblPlants:AT5G27420.1entrez:832801Gene3D:3.30.40.10GeneID:832801Genevisible:Q8LGA5
GO:GO:0004842GO:GO:0008270GO:GO:0009737GO:GO:0009814GO:GO:0009816GO:GO:0010200GO:GO:0016020
GO:GO:0016021GO:GO:0016874GO:GO:0043562Gramene:AT5G27420.1hmmpanther:PTHR14155HOGENOM:HOG000239182InParanoid:Q8LGA5
InterPro:IPR001841InterPro:IPR013083iPTMnet:Q8LGA5KEGG:ath:AT5G27420KO:K10664MINT:MINT-8062656OMA:KIMANWK
PaxDb:Q8LGA5Pfam:PF13639Pfam:Q8LGA5Pfscan:PS50089PhylomeDB:Q8LGA5PRIDE:Q8LGA5PRO:PR:Q8LGA5
PROSITE:PS50089ProteinModelPortal:Q8LGA5Proteomes:UP000006548RefSeq:NP_198094.1SMART:SM00184SMR:Q8LGA5STRING:3702.AT5G27420.1
SUPFAM:SSF57850TAIR:AT5G27420tair10-symbols:ATL31tair10-symbols:CNI1TMHMM:TMhelixUniGene:At.30807UniPathway:UPA00143
UniProt:Q8LGA5
Coordinates (TAIR10) chr5:+:9684119..9685225
Molecular Weight (calculated) 40293.10 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.21
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPIKHISLP VLVLFLLLSV SAGQPGTPDQ RHDPYAYSGS LSPAMAVVVV VVIAALFFMG FFTVYIRHCT GAVDGSVTPA GGARRRVTNA TVARGLDAET
101: IETFPTFVYS EVKTQKIGKG ALECAICLNE FEDDETLRLL PKCDHVFHPH CIGAWLQGHV TCPVCRTNLA EQTPEPEVVV ETDLEAQQQS AVPVPVVELP
201: RVKFPRSHTT GHSVVLPGES TDRFTLRVPE ELRKKIMANW KLNRSNSVFV LPRGGSSRSG KQVDRSRAKS DRWLFRKTPS FLWRNRDDGS IRLGGTGSVR
301: GNSVTSPSGD SVRADRWAFL RNPSFLWRNT TPVPSPRVEV NNKDGEGTSS VQHIGTVGST SGSLRLPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)