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AT5G27350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.897
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides.
Computational
Description (TAIR10)
SFP1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:18068eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC007123EMBL:AF410282EMBL:AY026254EMBL:AY143858
EMBL:CP002688EnsemblPlants:AT5G27350EnsemblPlants:AT5G27350.1entrez:832794GeneID:832794Genevisible:Q94CI7GO:GO:0005351
GO:GO:0005355GO:GO:0005887GO:GO:0009624GO:GO:0015992GO:GO:0035428GO:GO:0046323GO:GO:1904659
Gramene:AT5G27350.1hmmpanther:PTHR23500hmmpanther:PTHR23500:SF62HOGENOM:HOG000202868InParanoid:Q94CI7InterPro:IPR003663InterPro:IPR005828
InterPro:IPR005829InterPro:IPR020846KEGG:ath:AT5G27350OMA:YIATYAIPaxDb:Q94CI7Pfam:PF00083Pfam:Q94CI7
Pfscan:PS50850PhylomeDB:Q94CI7PRIDE:Q94CI7PRINTS:PR00171PRO:PR:Q94CI7PROSITE:PS00216PROSITE:PS00217
PROSITE:PS50850ProteinModelPortal:Q94CI7Proteomes:UP000006548Reactome:R-ATH-428790RefSeq:NP_568493.1scanprosite:PS00216scanprosite:PS00217
SMR:Q94CI7STRING:3702.AT5G27350.1SUPFAM:SSF103473TAIR:AT5G27350tair10-symbols:SFP1TIGRfam:TIGR00879TIGRFAMs:TIGR00879
TMHMM:TMhelixUniGene:At.21762UniProt:Q94CI7
Coordinates (TAIR10) chr5:+:9648958..9654176
Molecular Weight (calculated) 51789.00 Da
IEP (calculated) 7.61
GRAVY (calculated) 0.62
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMEEGRSIE EGLLQLKNKN DDSECRITAC VILSTFVAVC GSFSFGVATG YTSGAETGVM KDLDLSIAQF SAFGSFATLG AAIGALFCGN LAMVIGRRGT
101: MWVSDFLCIT GWLSIAFAKE VVLLNFGRII SGIGFGLTSY VVPVYIAEIT PKHVRGTFTF SNQLLQNAGL AMIYFCGNFI TWRTLALLGA LPCFIQVIGL
201: FFVPESPRWL AKVGSDKELE NSLFRLRGRD ADISREASEI QVMTKMVEND SKSSFSDLFQ RKYRYTLVVG IGLMLIQQFS GSAAVISYAS TIFRKAGFSV
301: AIGTTMLGIF VIPKAMIGLI LVDKWGRRPL LMTSAFGMSM TCMLLGVAFT LQKMQLLSEL TPILSFICVM MYIATYAIGL GGLPWVIMSE IFPINIKVTA
401: GSIVTLVSFS SSSIVTYAFN FLFEWSTQGT FFIFAGIGGA ALLFIWLLVP ETKGLSLEEI QVSLIHQPDE RNQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)