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AT5G27280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.957
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zim17-type zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zim17-type zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT1G68730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121WIeggNOG:KOG3277EMBL:AF007271EMBL:AY059931EMBL:AY081569EMBL:CP002688EnsemblPlants:AT5G27280
EnsemblPlants:AT5G27280.1entrez:832786GeneID:832786GO:GO:0008270Gramene:AT5G27280.1hmmpanther:PTHR20922hmmpanther:PTHR20922:SF15
HOGENOM:HOG000242086InterPro:IPR007853InterPro:IPR024158KEGG:ath:AT5G27280OMA:NDEAMGLPANTHER:PTHR20922Pfam:PF05180
Pfscan:PS51501PhylomeDB:O04646PIR:T01795PROSITE:PS51501Proteomes:UP000006548RefSeq:NP_198080.1SMR:O04646
STRING:3702.AT5G27280.1TAIR:AT5G27280UniGene:At.17611UniGene:At.49069UniGene:At.69944UniProt:O04646
Coordinates (TAIR10) chr5:+:9617548..9618369
Molecular Weight (calculated) 23318.90 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.51
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MEATSLSSAA TIISSSSSPL SIFSPKKRTD SSPPPRIVRL SNKKEDKDYD PQHSESNSSS LFRNRTLSND EAMGLVLSAA SVKGWTTGSG MEGPSLPAKT
101: DTDTVSTFPW SLFTKSPRRR MRVAFTCNVC GQRTTRAINP HAYTDGTVFV QCCGCNVFHK LVDNLNLFHE VKYYVSSSSF DYTDAKWDVS GLNLFDDEDD
201: DNAGDSNDVF PL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)