AT5G27240.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G04980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:9597552..9600866 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124450.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||
| Length | 1104 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDWNKEEACR AKTLAEDKMK EGDFVGAQKL LLKAQSLFSG LESLPQMLAV CDVHNSAEKK INCLENWYGI LQVMHFADDA TIKKQVRKLA LLLHPDKNQF 0101: PGAEAAFKLV WDASRFLADK DKRSQYDIRR RIYLRLATNQ LNANSGLQCA ATNSATDTFW TCCEHCGYRY KYLRKYVNIL LNCNICQRSY MAYDTGFNEA 0201: PSKSNTGQKE VQNQGPCNTS LNTNGESIGA QPGSVAAEVD KKGTFNKKFN KRNGGGESKK TEVKNSKIET EFVRNDDEEK MKSAAKLHKP HPEVTEPEIG 0301: ASKSVPDESV SRSDEAPSTS KDKNKMKKGV EESINVDGSD FIKDKAYSKD NNKRKSPRRS QQSSYAEEEK ISDNSLGPPK KRLRSNVGLK SEQTTRKGLV 0401: GVGSSKRFDS GGGSSAPSCA FKRKAKKFVD SGYQEISSVK DKEREVRKAS GEGVVMEAKI DNNHNPNENL ITEDLPDPEF SNFELTTSCF GVNQVWSMYD 0501: PIDGMPRLYA RIDKVLVPEF KLWITWIDPL QDNKDNSIPI ACGIFQGGGS EEENDHLKFS CQMFHLTRNN SVVIYPRKGE IWAIFRGWDI SWSASSENHK 0601: HPYEYDFVEV LSNFNDENGL GVGFLGKVEG FVSLFRQDAQ DGVLQLQIPP SQMLRFSHKV PSFKMTGKER EGVPPGCFEL DPAALPKELF EVYDSKVDVG 0701: LDRELPNGKT GGPFPEASKV EMQANTTRES SPFKKKRPKV HDNHGSFSKE SDGRRTNHER NSAKESRKSV KAVDALNLRK SPRLLSETNS QANSRSGRQI 0801: AEKKSANNGE SCGKPGGLSL SGEKMSEKTI TRMRKTPQDI HKPTVNVKKH GRNDESLSQS RGDGLLTQLN GNMKSSEPET RVPSSCKTVK ENTFNFENQR 0901: SWDKFQIDQI WAIYSNDKGS PRKYAQIKKI DTSPEFKLHV APLELYRPPI HMPRPVCCGR FKLKTGKAEV YVPSSFSHQV KAVKTKKNRF EVYPGKGEIW 1001: ALYKNCNTRD YTETEELEIV EVVETDEQRI QAMTLTAKGF NNKPLYRRSE ESNASFIDIP KTEVCRFSHQ IPAFRHESRA TRFGDGQYWE LDLKAVLGLN 1101: LKNP |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)