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AT5G27080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G26900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18040eggNOG:ENOG410XQ8IeggNOG:KOG0305EMBL:AF029264
EMBL:AF160760EMBL:CP002688EnsemblPlants:AT5G27080EnsemblPlants:AT5G27080.1
entrez:832766Gene3D:2.130.10.10GeneID:832766Genevisible:Q9S7H3
GO:GO:0005737GO:GO:0007067GO:GO:0016567GO:GO:0051301
GO:GO:0051488GO:GO:0097027Gramene:AT5G27080.1hmmpanther:PTHR19918
HOGENOM:HOG000195514IntAct:Q9S7H3InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR024977InterPro:IPR033010
KEGG:ath:AT5G27080KO:K03363PANTHER:PTHR19918PaxDb:Q9S7H3
Pfam:PF00400Pfam:PF12894Pfam:Q9S7H3Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9S7H3PRIDE:Q9S7H3PRO:PR:Q9S7H3
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9S7H3
Proteomes:UP000006548Reactome:R-ATH-141405Reactome:R-ATH-141430Reactome:R-ATH-174184
Reactome:R-ATH-179409RefSeq:NP_198060.1scanprosite:PS00678SMART:SM00320
SMR:Q9S7H3STRING:3702.AT5G27080.1SUPFAM:SSF50978TAIR:AT5G27080
UniGene:At.51416UniPathway:UPA00143UniProt:Q9S7H3
Coordinates (TAIR10) chr5:-:9529603..9531081
Molecular Weight (calculated) 51716.10 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.38
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDTCTVPD HFLPRKLSKQ NLDRFIPNRS AMDFDFANYA LTQGRKRNVD EITSASRKAY MTQLAVVMNQ NRTRILAFRN KPKALLSSNH SDSPHQNPKS
101: VKPRRYIPQN SERVLDAPGL MDDFYLNLLD WGSANVLAIA LGDTVYLWDA SSGSTSELVT IDEDKGPVTS INWTQDGLDL AVGLDNSEVQ LWDFVSNRQV
201: RTLIGGHESR VGSLAWNNHI LTTGGMDGKI VNNDVRIRSS IVGTYLGHTE EVCGLKWSES GKKLASGGNY NVVHIWDHRS VASSKPTRQW LHRFEEHTAA
301: VRALAWCPFQ ATLLATGGGV GDGKIKFWNT HTGACLNSVE TGSQVCSLLW SQRERELLSS HGFTQNQLTL WKYPSMSKMA ELNGHTSRVL FMAQSPNGCT
401: VASAAGDENL RLWNVFGEPP KTTKKAASKN YLELFSHVNS LRWCLVSFAS GIDVLGKSNI IHSNCD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)