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AT5G27030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.440
plasma membrane 0.330
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TOPLESS-related 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TOPLESS-related 3 (TPR3); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 2 (TAIR:AT3G16830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:18036DIP:DIP-58587NeggNOG:ENOG410XP3KeggNOG:KOG0266EMBL:AF160760EMBL:BT004037EMBL:BT005165
EMBL:CP002688EnsemblPlants:AT5G27030EnsemblPlants:AT5G27030.1entrez:832761ExpressionAtlas:Q84JM4Gene3D:2.130.10.10GeneID:832761
GO:GO:0005634GO:GO:0006351GO:GO:0006355hmmpanther:PTHR22847hmmpanther:PTHR22847:SF424HOGENOM:HOG000237725InParanoid:Q84JM4
IntAct:Q84JM4InterPro:IPR001680InterPro:IPR006594InterPro:IPR006595InterPro:IPR011047InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR027728iPTMnet:Q84JM4PANTHER:PTHR22847:SF424PaxDb:Q84JM4Pfam:PF00400Pfam:Q84JM4
Pfscan:PS50082Pfscan:PS50294Pfscan:PS50896Pfscan:PS50897PhylomeDB:Q84JM4PRIDE:Q84JM4PRO:PR:Q84JM4
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294PROSITE:PS50896PROSITE:PS50897ProteinModelPortal:Q84JM4Proteomes:UP000006548
RefSeq:NP_198055.3scanprosite:PS00678SMART:SM00320SMART:SM00667SMART:SM00668SMR:Q84JM4STRING:3702.AT5G27030.2
SUPFAM:SSF50998TAIR:AT5G27030tair10-symbols:TPR3UniGene:At.27881UniGene:At.51069UniGene:At.69325UniProt:Q84JM4
Coordinates (TAIR10) chr5:-:9508913..9515263
Molecular Weight (calculated) 122663.00 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.29
Length 1108 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)