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AT5G26950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 93
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 93 (AGL93); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 53 (TAIR:AT5G27070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AF007270EMBL:AY141228EMBL:BT028900EMBL:CP002688EnsemblPlants:AT5G26950
EnsemblPlants:AT5G26950.1entrez:832753GeneID:832753GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT5G26950.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF240HOGENOM:HOG000033847InParanoid:Q7X9H9IntAct:Q7X9H9InterPro:IPR002100
KEGG:ath:AT5G26950OMA:VANDSQRPaxDb:Q7X9H9Pfam:PF00319Pfam:Q7X9H9Pfscan:PS50066PhylomeDB:Q7X9H9
PRO:PR:Q7X9H9PROSITE:PS50066ProteinModelPortal:Q7X9H9Proteomes:UP000006548RefSeq:NP_198047.1SMART:SM00432SMR:Q7X9H9
STRING:3702.AT5G26950.1SUPFAM:SSF55455TAIR:AT5G26950tair10-symbols:AGL93UniGene:At.64250UniProt:Q7X9H9
Coordinates (TAIR10) chr5:-:9483251..9484120
Molecular Weight (calculated) 32756.90 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.63
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)