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AT5G26880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.749
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 26
Curator
Summary (TAIR10)
Root Specific
Computational
Description (TAIR10)
AGAMOUS-like 26 (AGL26); FUNCTIONS IN: RNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, RNA methyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 89 (TAIR:AT5G27580.1); Has 6012 Blast hits to 6012 proteins in 2123 species: Archae - 0; Bacteria - 4418; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1549 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0219EMBL:CP002688EnsemblPlants:AT5G26880EnsemblPlants:AT5G26880.1entrez:832746ExpressionAtlas:F4K1D2Gene3D:3.40.1280.10
GeneID:832746GO:GO:0003677GO:GO:0003723GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006396
GO:GO:0008173Gramene:AT5G26880.1HAMAP:MF_01885hmmpanther:PTHR12029hmmpanther:PTHR12029:SF31InParanoid:F4K1D2InterPro:IPR001537
InterPro:IPR002100InterPro:IPR016914InterPro:IPR029026InterPro:IPR029028PaxDb:F4K1D2Pfam:PF00319Pfam:PF00588
Pfscan:PS50066PRIDE:F4K1D2PROSITE:PS50066ProteinModelPortal:F4K1D2Proteomes:UP000006548RefSeq:NP_198040.3SMART:SM00432
SMR:F4K1D2STRING:3702.AT5G26880.1SUPFAM:SSF55455SUPFAM:SSF75217TAIR:AT5G26880tair10-symbols:AGL26UniGene:At.19311
UniProt:F4K1D2
Coordinates (TAIR10) chr5:-:9457301..9459190
Molecular Weight (calculated) 41567.20 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.40
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSILRCQEE NQIFCEKKPN LSMREDTMFK KALELSTLCD IEVCVILYSR DGELIKTWPE DQSKVRDMAE RFSKLHERER
301: RKKRTNLSLF LRKKILDNSK LSEKVLEMKD SLESGLRVLQ DKLLLLQPEK NQTELGQIPV INNGQNHW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)