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AT5G26850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.563
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterized protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterized protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YJSKeggNOG:KOG1877EMBL:CP002688EnsemblPlants:AT5G26850EnsemblPlants:AT5G26850.1EnsemblPlants:AT5G26850.2EnsemblPlants:AT5G26850.3
EnsemblPlants:AT5G26850.4entrez:832743GeneID:832743Gramene:AT5G26850.1Gramene:AT5G26850.2Gramene:AT5G26850.3Gramene:AT5G26850.4
hmmpanther:PTHR12444hmmpanther:PTHR12444:SF3InterPro:IPR016024KEGG:ath:AT5G26850ncoils:CoilOMA:KFIYSQVProteomes:UP000006548
RefSeq:NP_001031947.2RefSeq:NP_001031948.2RefSeq:NP_001190405.1RefSeq:NP_198037.3STRING:3702.AT5G26850.1SUPFAM:SSF48371TAIR:AT5G26850
UniGene:At.27727UniGene:At.72725UniProt:F4K1C7
Coordinates (TAIR10) chr5:+:9445950..9450584
Molecular Weight (calculated) 109861.00 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.19
Length 983 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFISRNVFP ACESMCICCP ALRSRSRQPV KRYKKLLGEI FPKSPDGGPN ERKIVKLCEY AAKNPIRIPK IAKFLEERCY KDLRSEQMKF INIVTEAYNK
101: MLCHCKDQMA YFATSLLNVV TELLDNSKQD TPTILGCQTL TRFIYSQVDG TYTHSIEKFA LKVCSLAREE GEEHQKQCLR ASGLQCLSAM VWYMGEFSHI
201: FATVDEIVHA ILDNYEADMI VQTNEDREEQ NCNWVNEVIR CEGRGTTICN SPSYMIVRPR TARKDPTLLT KEETEMPKVW AQICLQRMVD LAKESTTLRQ
301: ILDPMFSYFN SRRQWTPPNG LAMIVLSDAV YLMETSGSQQ LVLSTVVRHL DNKHVANDPE LKAYIIQVAG CLAKLIRTSS YLRDISFVND LCRHLRKSFQ
401: ATARSIGDEE LNLNVMIQNS IEDCLREIAK GIVNTQPLFD MMAVSVEGLP SSGIVSRAAV GSLLILAHAM SSALSPSMRS QQVFPDTLLD ALLKAMLHPN
501: VETRVGAHEI FSVILLQSSG QSQAGLASVR ASGYLNESRN WRSDTTSAFT SVTARLDKLR KEKDGVKIEK NGYNNTHEDL KNYKSSPKFH KLNSIIDRTA
601: GFINLADMLP SMMKFTEDQI GQLLSAFWIQ SALPDILPSN IEAIAHSFSL VLLSLRLKNP DDGLVVRAFQ LLFSLRTLSL DLNNGTLPSV CKRLILALST
701: SMLMFAAKIY QIPHICEMLK AQLPGDVDPY LFIGDDLQLH VRPQANMKDF GSSSDSQMAT SMLFEMRSKV ELSNTIITDI VAKNLPKLSK LEEADVKMQI
801: LEQFTPDDAF MFGSRPNIEP QPNQSISKES LSFDEDIPAG SMVEDEVTSE LSVRFPPRGS PSPSIPQVIS IGQLMESALE VAGQVVGSSV STSPLPYDTM
901: TNRCETFGTG TREKLSRWLA TENRQMNGLY GNSLEESSAL EKVVEDGNIY GRESGMLQDS WSMMRLPPAS PFDNFLKAAG AGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)