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AT5G26667.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase.
Computational
Description (TAIR10)
PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 14045 Blast hits to 13848 proteins in 4925 species: Archae - 109; Bacteria - 9053; Metazoa - 1251; Fungi - 483; Plants - 459; Viruses - 0; Other Eukaryotes - 2690 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G26667-MONOMERBioCyc:ARA:GQT-645-MONOMERBioCyc:ARA:GQT-724-MONOMERBioCyc:MetaCyc:AT5G26667-MONOMER
BioGrid:17985BRENDA:2.7.4.14EC:2.7.4.14eggNOG:COG0563
eggNOG:KOG3079EMBL:AC137518EMBL:AF000147EMBL:BT029445
EMBL:CP002688EnsemblPlants:AT5G26667EnsemblPlants:AT5G26667.1EnsemblPlants:AT5G26667.2
EnsemblPlants:AT5G26667.3entrez:832710ExpressionAtlas:O04905Gene3D:3.40.50.300
GeneID:832710GO:GO:0004127GO:GO:0005524GO:GO:0005634
GO:GO:0005737GO:GO:0006207GO:GO:0006221GO:GO:0009041
GO:GO:0046939gramene_pathway:2.7.4.14gramene_pathway:PWY-5687HAMAP:MF_00235
HAMAP:MF_03172hmmpanther:PTHR23359hmmpanther:PTHR23359:SF100HOGENOM:HOG000238771
InParanoid:O04905IntAct:O04905InterPro:IPR000850InterPro:IPR006266
InterPro:IPR027417iPTMnet:O04905KEGG:00230+2.7.4.3KEGG:00240+2.7.4.14
KEGG:ath:AT5G26667KO:K13800OMA:RSGNIVPPANTHER:PTHR23359
PaxDb:O04905Pfam:PF00406PhylomeDB:O04905PRIDE:O04905
PRINTS:PR00094PRO:PR:O04905PROSITE:PS00113ProteinModelPortal:O04905
Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_001031942.1RefSeq:NP_850867.1
RefSeq:NP_850868.1scanprosite:PS00113SMR:O04905STRING:3702.AT5G26667.1
SUPFAM:SSF52540TAIR:AT5G26667tair10-symbols:PYR6TIGRfam:TIGR01359
TIGRFAMs:TIGR01359UniGene:At.10397unipathway:UPA00588UniProt:A0JQ75
Coordinates (TAIR10) chr5:+:9276659..9277788
Molecular Weight (calculated) 23125.80 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.37
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVDAANGS GKKPTVIFVL GGPGSGKGTQ CAYIVEHYGY THLSAGDLLR AEIKSGSENG TMIQNMIKEG KIVPSEVTIK LLQKAIQENG NDKFLIDGFP
101: RNEENRAAFE KVTEIEPKFV LFFDCPEEEM EKRLLGRNQG REDDNIETIR KRFKVFLESS LPVIHYYEAK GKVRKINAAK PIEAVFEEVK AIFSPEAEKV
201: KLNSCAIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)