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AT5G26650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 36
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 36 (AGL36); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like-34 (TAIR:AT5G26580.1); Has 3545 Blast hits to 3533 proteins in 436 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 158; Plants - 2746; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioGrid:17999eggNOG:COG5068eggNOG:KOG0014EMBL:AF058914EMBL:AY141247EMBL:CP002688EnsemblPlants:AT5G26650
EnsemblPlants:AT5G26650.1entrez:832724GeneID:832724Genevisible:Q7XJK6GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT5G26650.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF153HOGENOM:HOG000006067InParanoid:Q7XJK6IntAct:Q7XJK6
InterPro:IPR002100KEGG:ath:AT5G26650ncoils:CoilOMA:QYANANQPaxDb:Q7XJK6Pfam:PF00319Pfam:Q7XJK6
Pfscan:PS50066PhylomeDB:Q7XJK6PIR:T01195PRIDE:Q7XJK6PRINTS:PR00404PRO:PR:Q7XJK6PROSITE:PS50066
ProteinModelPortal:Q7XJK6Proteomes:UP000006548RefSeq:NP_850880.2SMART:SM00432SMR:Q7XJK6STRING:3702.AT5G26650.1SUPFAM:SSF55455
TAIR:AT5G26650tair10-symbols:AGL36UniGene:At.49065UniProt:Q7XJK6
Coordinates (TAIR10) chr5:+:9343785..9344885
Molecular Weight (calculated) 41813.50 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.55
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKVKLSLIA NERSRKTSFI KRKDGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE GAKKVASRFL EMPPTARTKK MMDQETYLME RITKAKEQLK
101: NLAAENRELQ VRRFMFDCVE GKMSQYHYDA KDLQDLQSCI NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE SFSDSPIHAT TGVVDTLNAT
201: NPHVLTGDMT PFLDADATAV TASSRFFDHI PYENMNMSQN LHEPFQHLVP TNVCDFFQNQ NMNQVQYQAP NNLFNQIQRE FYNINLNLNL NLNSNQYLNQ
301: QQSFMNPMVE QHMNHVGGRE SIPFVDGNCY NYHQLPSNQL PAVDHASTSY MPSTTGVYDP YINNNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)