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AT5G26610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D111/G-patch domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1); Has 2550 Blast hits to 2366 proteins in 262 species: Archae - 4; Bacteria - 51; Metazoa - 1383; Fungi - 291; Plants - 280; Viruses - 14; Other Eukaryotes - 527 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP4YeggNOG:KOG2184EMBL:AK229675EMBL:BT026069EMBL:CP002688EnsemblPlants:AT5G26610EnsemblPlants:AT5G26610.1
EnsemblPlants:AT5G26610.2EnsemblPlants:AT5G26610.3entrez:832729GeneID:832729GO:GO:0003676GO:GO:0046872Gramene:AT5G26610.1
Gramene:AT5G26610.2Gramene:AT5G26610.3hmmpanther:PTHR17614HOGENOM:HOG000083817InterPro:IPR000467InterPro:IPR007087InterPro:IPR022755
KEGG:ath:AT5G26610ncoils:CoilOMA:KVFYCELPfam:PF01585Pfam:PF12171Pfscan:PS50174PhylomeDB:Q147M4
PROSITE:PS00028PROSITE:PS50174Proteomes:UP000006548RefSeq:NP_001190403.1RefSeq:NP_850884.1RefSeq:NP_850885.1scanprosite:PS00028
SMART:SM00443STRING:3702.AT5G26610.1TAIR:AT5G26610UniGene:At.43411UniProt:Q147M4
Coordinates (TAIR10) chr5:+:9375456..9376991
Molecular Weight (calculated) 34816.20 Da
IEP (calculated) 8.62
GRAVY (calculated) -1.08
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MDISRRESKT EASSREKRIY EKDQMNQESF IEGLAEEFRL PITHRVTENV DLEDVEQASL DVKISSSNVG FRLLQKMGWK GKGLGKQEQG ITEPIKSGIR
101: DRRLGLGKQE EDDYFTAEEN IQRKKLDIEI EETEEIAKKR EVLAEREQKI QSDVKEIRKV FYCELCSKQY RTVMEFEGHL SSYDHNHKKR FKEMKEMHGA
201: SGRDERKKRE QQRQEREMTK MADARKQHQM QQSQQEVPEN VPVSAPAKTT VAPLAVQDQR KTLKFGFSSK SGIISKSQPT SSIKKPKVAI ASVFGNDSDE
301: D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)