suba logo
AT5G26570.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : catalytics;carbohydrate kinases;phosphoglucan, water dikinases
Curator
Summary (TAIR10)
chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.
Computational
Description (TAIR10)
ATGWD3; FUNCTIONS IN: carbohydrate kinase activity, catalytic activity, phosphoglucan, water dikinase activity; INVOLVED IN: protein amino acid autophosphorylation, carbohydrate metabolic process, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), ATP-grasp fold, subdomain 1 (InterPro:IPR013815); BEST Arabidopsis thaliana protein match is: Pyruvate phosphate dikinase, PEP/pyruvate binding domain (TAIR:AT1G10760.1); Has 3898 Blast hits to 3880 proteins in 1425 species: Archae - 252; Bacteria - 2881; Metazoa - 32; Fungi - 198; Plants - 278; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G26570-MONOMERBioCyc:ARA:GQT-831-MONOMERBioCyc:MetaCyc:AT5G26570-MONOMERBioGrid:17981CAZy:CBM20EC:2.7.9.5eggNOG:COG0574
eggNOG:ENOG410IIIJEMBL:AF077407EMBL:AJ635427EMBL:AY747068EMBL:BT005745EMBL:CP002688EnsemblPlants:AT5G26570
EnsemblPlants:AT5G26570.1entrez:832706ExpressionAtlas:Q6ZY51Gene3D:2.60.40.10Gene3D:3.30.1490.20Gene3D:3.30.470.20GeneID:832706
Genevisible:Q6ZY51GO:GO:0005524GO:GO:0005982GO:GO:0005983GO:GO:0009507GO:GO:0009536GO:GO:0009570
GO:GO:0019200GO:GO:0046777GO:GO:0046835GO:GO:0046872GO:GO:0051752GO:GO:2001070hmmpanther:PTHR22931
hmmpanther:PTHR22931:SF2HOGENOM:HOG000265182InParanoid:Q6ZY51InterPro:IPR002044InterPro:IPR002192InterPro:IPR013783InterPro:IPR013784
InterPro:IPR013815InterPro:IPR013816OMA:GKDKIWEPaxDb:Q6ZY51Pfam:PF00686Pfam:PF01326Pfam:Q6ZY51
Pfscan:PS51166PhylomeDB:Q6ZY51PIR:T01856PIR:T01857PRIDE:Q6ZY51PRO:PR:Q6ZY51PROSITE:PS51166
ProteinModelPortal:Q6ZY51Proteomes:UP000006548RefSeq:NP_198009.3SMART:SM01065SMR:Q6ZY51STRING:3702.AT5G26570.1SUPFAM:SSF49452
SUPFAM:SSF56059TAIR:AT5G26570tair10-symbols:ATGWD3tair10-symbols:OK1tair10-symbols:PWDUniGene:At.20942UniProt:Q6ZY51
Coordinates (TAIR10) chr5:+:9261580..9267526
Molecular Weight (calculated) 131330.00 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.34
Length 1196 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESIGSHCCS SPFTFITRNS SSSLPRLVNI THRVNLSHQS HRLRNSNSRL TCTATSSSTI EEQRKKKDGS GTKVRLNVRL DHQVNFGDHV AMFGSAKEIG
0101: SWKKKSPLNW SENGWVCELE LDGGQVLEYK FVIVKNDGSL SWESGDNRVL KVPNSGNFSV VCHWDATRET LDLPQEVGND DDVGDGGHER DNHDVGDDRV
0201: VGSENGAQLQ KSTLGGQWQG KDASFMRSND HGNREVGRNW DTSGLEGTAL KMVEGDRNSK NWWRKLEMVR EVIVGSVERE ERLKALIYSA IYLKWINTGQ
0301: IPCFEDGGHH RPNRHAEISR LIFRELEHIC SKKDATPEEV LVARKIHPCL PSFKAEFTAA VPLTRIRDIA HRNDIPHDLK QEIKHTIQNK LHRNAGPEDL
0401: IATEAMLQRI TETPGKYSGD FVEQFKIFHN ELKDFFNAGS LTEQLDSMKI SMDDRGLSAL NLFFECKKRL DTSGESSNVL ELIKTMHSLA SLRETIIKEL
0501: NSGLRNDAPD TAIAMRQKWR LCEIGLEDYF FVLLSRFLNA LETMGGADQL AKDVGSRNVA SWNDPLDALV LGVHQVGLSG WKQEECLAIG NELLAWRERD
0601: LLEKEGEEDG KTIWAMRLKA TLDRARRLTA EYSDLLLQIF PPNVEILGKA LGIPENSVKT YTEAEIRAGI IFQISKLCTV LLKAVRNSLG SEGWDVVVPG
0701: STSGTLVQVE SIVPGSLPAT SGGPIILLVN KADGDEEVSA ANGNIAGVML LQELPHLSHL GVRARQEKIV FVTCDDDDKV ADIRRLVGKF VRLEASPSHV
0801: NLILSTEGRS RTSKSSATKK TDKNSLSKKK TDKKSLSIDD EESKPGSSSS NSLLYSSKDI PSGGIIALAD ADVPTSGSKS AACGLLASLA EASSKVHSEH
0901: GVPASFKVPT GVVIPFGSME LALKQNNSEE KFASLLEKLE TARPEGGELD DICDQIHEVM KTLQVPKETI NSISKAFLKD ARLIVRSSAN VEDLAGMSAA
1001: GLYESIPNVS PSDPLVFSDS VCQVWASLYT RRAVLSRRAA GVSQREASMA VLVQEMLSPD LSFVLHTVSP ADPDSNLVEA EIAPGLGETL ASGTRGTPWR
1101: LASGKLDGIV QTLAFANFSE ELLVSGTGPA DGKYVRLTVD YSKKRLTVDS VFRQQLGQRL GSVGFFLERN FGCAQDVEGC LVGEDVYIVQ SRPQPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)