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AT5G26240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:8969232 (1996): unclear
  • PMID:17376158 (2007): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloride channel D
Curator
Summary (TAIR10)
member of Anion channel protein family
Computational
Description (TAIR10)
chloride channel D (CLC-D); CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel ClC-plant (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel C (TAIR:AT5G49890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17968eggNOG:COG0038eggNOG:KOG0474EMBL:AC005965EMBL:AF077407EMBL:CP002688EMBL:Z71450
EnsemblPlants:AT5G26240EnsemblPlants:AT5G26240.1entrez:832693Gene3D:1.10.3080.10GeneID:832693Genevisible:P92943GO:GO:0005247
GO:GO:0005802GO:GO:0009826GO:GO:0034707Gramene:AT5G26240.1hmmpanther:PTHR11689hmmpanther:PTHR11689:SF92HOGENOM:HOG000231081
InParanoid:P92943InterPro:IPR000644InterPro:IPR001807InterPro:IPR002251InterPro:IPR014743KEGG:ath:AT5G26240KO:K05016
OMA:NSGIECPPaxDb:P92943Pfam:P92943Pfam:PF00571Pfam:PF00654Pfscan:PS51371PhylomeDB:P92943
PIR:T01843PRIDE:P92943PRINTS:PR00762PRINTS:PR01120PRO:PR:P92943PROSITE:PS51371ProteinModelPortal:P92943
Proteomes:UP000006548Reactome:R-ATH-2672351RefSeq:NP_197996.1SMART:SM00116SMR:P92943STRING:3702.AT5G26240.1SUPFAM:SSF54631
SUPFAM:SSF81340TAIR:AT5G26240tair10-symbols:ATCLC-Dtair10-symbols:CLC-DTMHMM:TMhelixUniGene:At.25560UniProt:P92943
Coordinates (TAIR10) chr5:+:9189622..9194347
Molecular Weight (calculated) 87067.10 Da
IEP (calculated) 7.93
GRAVY (calculated) 0.23
Length 792 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSNHLQNGI ESDNLLWSRV PESDDTSTDD ITLLNSHRDG DGGVNSLDYE VIENYAYREE QAHRGKLYVG YYVAVKWFFS LLIGIGTGLA AVFINLSVEN
101: FAGWKFALTF AIIQKSYFAG FIVYLLINLV LVFSSAYIIT QFAPAAAGSG IPEIKGYLNG IDIPGTLLFR TLIGKIFGSI GSVGGGLALG KEGPLVHTGA
201: CIASLLGQGG STKYHLNSRW PQLFKSDRDR RDLVTCGCAA GVAAAFRAPV GGVLFALEEV TSWWRSQLMW RVFFTSAIVA VVVRTAMGWC KSGICGHFGG
301: GGFIIWDVSD GQDDYYFKEL LPMAVIGVIG GLLGALFNQL TLYMTSWRRN SLHKKGNRVK IIEACIISCI TSAISFGLPL LRKCSPCPES VPDSGIECPR
401: PPGMYGNYVN FFCKTDNEYN DLATIFFNTQ DDAIRNLFSA KTMREFSAQS LLTFLAMFYT LAVVTFGTAV PAGQFVPGIM IGSTYGRLVG MFVVRFYKKL
501: NIEEGTYALL GAASFLGGSM RMTVSLCVIM VEITNNLKLL PLIMLVLLIS KAVGDAFNEG LYEVQARLKG IPLLESRPKY HMRQMIAKEA CQSQKVISLP
601: RVIRVADVAS ILGSNKHNGF PVIDHTRSGE TLVIGLVLRS HLLVLLQSKV DFQHSPLPCD PSARNIRHSF SEFAKPVSSK GLCIEDIHLT SDDLEMYIDL
701: APFLNPSPYV VPEDMSLTKV YNLFRQLGLR HLFVVPRPSR VIGLITRKDL LIEENGESSA VELQQSTSVR GRYSETATRM DAARPLLDDL LG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)