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AT5G26220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ChaC-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ChaC-like family protein; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT4G31290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:832691eggNOG:COG3703eggNOG:KOG3182EMBL:AK117855EMBL:BT005234EMBL:CP002688EnsemblPlants:AT5G26220
EnsemblPlants:AT5G26220.1entrez:832691Gene3D:3.10.490.10GeneID:832691GO:GO:0010288GO:GO:0046686Gramene:AT5G26220.1
hmmpanther:PTHR12192hmmpanther:PTHR12192:SF10HOGENOM:HOG000264264InterPro:IPR006840InterPro:IPR013024KEGG:ath:AT5G26220OMA:STGAICW
PANTHER:PTHR12192Pfam:PF04752PhylomeDB:Q8GY54Proteomes:UP000006548Reactome:R-ATH-174403RefSeq:NP_197994.1STRING:3702.AT5G26220.1
TAIR:AT5G26220UniGene:At.11746UniProt:Q8GY54
Coordinates (TAIR10) chr5:-:9163178..9164613
Molecular Weight (calculated) 24574.20 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.33
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLWVFGYGS LIWNPGFDFD EKLIGYIKDY KRVFDLACID HRGTPEHPAR TCTLEQSTGA ICWGAAYCVR GGPEKEKLAM EYLERRECEY DSKTLVEFYT
101: ENDTSTPIVT GVIVFTSTPD KVSNKYYLGP APLEEMARQI ATASGPCGNN REYLFKLEKA MFDIEHEEEY VIELANEVRK QLDLPEEVKA LLKPIVSHVS
201: VKSQAHVSTR QRVFAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)