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AT5G26040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone deacetylase 2
Curator
Summary (TAIR10)
Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.
Computational
Description (TAIR10)
histone deacetylase 2 (HDA2); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 9 (TAIR:AT3G44680.1); Has 5195 Blast hits to 5176 proteins in 1086 species: Archae - 142; Bacteria - 1739; Metazoa - 784; Fungi - 275; Plants - 317; Viruses - 0; Other Eukaryotes - 1938 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G26040EnsemblPlants:AT5G26040.1entrez:832673hmmpanther:PTHR10625hmmpanther:PTHR10625:SF112Pfam:PF00850SUPFAM:SSF52768
tair10-symbols:HDA2TMHMM:TMhelix
Coordinates (TAIR10) chr5:-:9099321..9101598
Molecular Weight (calculated) 40653.70 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.15
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGDLD AHQGNGHETD LGDDNRVYIL DMYNPEIYPF DYRARRFIDQ KVEVMSGTTT DEYLRKLDEA LEVASRNFQP ELVIYNAGTD ILDGDPLGLL
301: KISPDGITSR DEKVFRFARE KNIPLVMLTS GGYMKSSARV IADSIENLSR QGLIQTRPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)