AT5G25930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase family protein with leucine-rich repeat domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor like protein 52 (TAIR:AT5G25910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9050880..9053978 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111970.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1005 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTRLPLPFLF FFLTSIPLSV FSQFNDQSTL LNLKRDLGDP PSLRLWNNTS SPCNWSEITC TAGNVTGINF KNQNFTGTVP TTICDLSNLN FLDLSFNYFA 0101: GEFPTVLYNC TKLQYLDLSQ NLLNGSLPVD IDRLSPELDY LDLAANGFSG DIPKSLGRIS KLKVLNLYQS EYDGTFPSEI GDLSELEELR LALNDKFTPA 0201: KIPIEFGKLK KLKYMWLEEM NLIGEISPVV FENMTDLEHV DLSVNNLTGR IPDVLFGLKN LTEFYLFANG LTGEIPKSIS ATNLVFLDLS ANNLTGSIPV 0301: SIGNLTKLQV LNLFNNKLTG EIPPVIGKLP GLKEFKIFNN KLTGEIPAEI GVHSKLERFE VSENQLTGKL PENLCKGGKL QGVVVYSNNL TGEIPESLGD 0401: CGTLLTVQLQ NNDFSGKFPS RIWNASSMYS LQVSNNSFTG ELPENVAWNM SRIEIDNNRF SGEIPKKIGT WSSLVEFKAG NNQFSGEFPK ELTSLSNLIS 0501: IFLDENDLTG ELPDEIISWK SLITLSLSKN KLSGEIPRAL GLLPRLLNLD LSENQFSGGI PPEIGSLKLT TFNVSSNRLT GGIPEQLDNL AYERSFLNNS 0601: NLCADNPVLS LPDCRKQRRG SRGFPGKILA MILVIAVLLL TITLFVTFFV VRDYTRKQRR RGLETWKLTS FHRVDFAESD IVSNLMEHYV IGSGGSGKVY 0701: KIFVESSGQC VAVKRIWDSK KLDQKLEKEF IAEVEILGTI RHSNIVKLLC CISREDSKLL VYEYLEKRSL DQWLHGKKKG GTVEANNLTW SQRLNIAVGA 0801: AQGLCYMHHD CTPAIIHRDV KSSNILLDSE FNAKIADFGL AKLLIKQNQE PHTMSAVAGS FGYIAPEYAY TSKVDEKIDV YSFGVVLLEL VTGREGNNGD 0901: EHTNLADWSW KHYQSGKPTA EAFDEDIKEA STTEAMTTVF KLGLMCTNTL PSHRPSMKEV LYVLRQQGLE ATKKTATEAY EAPLLVSLSG RRTSKRVEDE 1001: DLGFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)